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Sample GSM151330 Query DataSets for GSM151330
Status Public on Mar 01, 2007
Title GUYT_50228 (HG-U133PLUS2)
Sample type RNA
 
Source name breast
Organism Homo sapiens
Characteristics samplename: GUYT_50228
ID: 50228
series: GUYT
age: 74
grade: 3
size: 1.50
er: 1
pgr: 1
node: 1
t.rfs: 3429
e.rfs: 0
t.dmfs: 3429
e.dmfs: 0
Extracted molecule total RNA
Extraction protocol Isolation of RNA was performed using the Trizol method (Invitrogen) according to the manufacturers instructions and was purified using RNeasy mini-columns (Qiagen, Valencia, CA). The quality of the RNA obtained from each tumour sample was assessed based on the RNA profile generated by the bioanalyzer (Agilent Inc)olation of RNA was performed using the Trizol method (Invitrogen) according to the manufacturers instructions and was purified using RNeasy mini-columns (Qiagen, Valencia, CA). The quality of the RNA obtained from each tumour sample was assessed based on the RNA profile generated by the bioanalyzer (Agilent Inc)
Label biotin
Label protocol Approximately 1 microgram of total RNA was processed to produce biotinylated cRNA targets.
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description Tumor samples from tamoxifen treated primary breast cancer patients.
Data processing RMA Bioconductor
 
Submission date Dec 14, 2006
Last update date Aug 28, 2018
Contact name Benjamin Haibe-Kains
E-mail(s) benjamin.haibe.kains@utoronto.ca
Phone +14165818626
Organization name Princess Margaret Cancer Centre
Department Princess Margaret Research
Lab Bioinformatics and Computational Genomics
Street address 610 University Avenue
City Toronto
State/province Ontario
ZIP/Postal code M5G 2M9
Country Canada
 
Platform ID GPL570
Series (1)
GSE6532 Definition of clinically distinct molecular subtypes in estrogen receptor positive breast carcinomas using genomic grade
Relations
Reanalyzed by GSE64985
Reanalyzed by GSE119087

Data table header descriptions
ID_REF
VALUE RMA normalized signal intensity

Data table
ID_REF VALUE
1007_s_at 8.564165895
1053_at 6.507554231
117_at 5.240377078
121_at 6.049000976
1255_g_at 1.791059475
1294_at 6.088096393
1316_at 3.428320707
1320_at 2.846585946
1405_i_at 8.712106517
1431_at 2.474855486
1438_at 4.255359969
1487_at 5.623515534
1494_f_at 3.680098062
1552256_a_at 6.32713772
1552257_a_at 7.039943461
1552258_at 3.136123646
1552261_at 2.951760957
1552263_at 4.644516887
1552264_a_at 5.354202167
1552266_at 2.727713531

Total number of rows: 54675

Table truncated, full table size 1212 Kbytes.




Supplementary file Size Download File type/resource
GSM151330.CEL.gz 7.4 Mb (ftp)(http) CEL

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