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Sample GSM133724 Query DataSets for GSM133724
Status Public on Jan 08, 2007
Title McCormac_1-2_wildtype-Contrl_Rep1_ATH1
Sample type RNA
 
Source name Col-0
Organism Arabidopsis thaliana
Characteristics Stock Code: N1092
Developmental stage: 1.0-cotyledons_fully_opened
Tissue: whole young seedlings in entirety with cotyledons, hypocotyl and primary roots - (no emerged true leaves).
Treatment protocol WT seedlings which had not been treated with Norflurazon and therefore are the control sample.
Extracted molecule total RNA
Label biotin
 
Description location: Growth Room
Humidity: in sealed petri dish therefore 80%
Temperature: 23oC
Lighting: 3d growth in darkness followed by 3d continuous white light
Medium: Murashige and Skoog basal salts solidified with agar
Treatment: control
Nutrients: 1.5 w/v sucrose
Stratification: no (seeds were vernalised prior to germination)
Data processing The data were analysed using Affymetrix Microarray Suite 5.0 (MAS5)
 
Submission date Sep 01, 2006
Last update date Aug 28, 2018
Contact name Nottingham Arabidopsis Stock Centre (NASC)
E-mail(s) affy@arabidopsis.info
Phone +44 (0)115 951 3237
Fax +44 (0)115 951 3297
URL http://arabidopsis.info/
Organization name Nottingham Arabidopsis Stock Centre (NASC)
Department School of Biosciences, University of Nottingham
Street address Sutton Bonington Campus
City Loughborough
ZIP/Postal code LE12 5RD
Country United Kingdom
 
Platform ID GPL198
Series (1)
GSE5726 Seedling transcriptome affected by Norflurazon-induced photobleaching of chloroplasts
Relations
Reanalyzed by GSE119083

Data table header descriptions
ID_REF
VALUE This is the final calculated measurement for each probe set identifier that has been made comparable across all samples and rows
ABS_CALL A qualitative measurement indicating if the probe set is detected
DETECTION P-VALUE A p-value indicating the significance of the Detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-r2-P1-cre-5_at 3.27080000000000E+003 P 2.44000000000000E-004
AFFX-r2-P1-cre-3_at 3.63590000000000E+003 P 2.44000000000000E-004
AFFX-r2-Ec-bioD-5_at 6.40900000000000E+002 P 2.44000000000000E-004
AFFX-r2-Ec-bioD-3_at 7.05300000000000E+002 P 2.44000000000000E-004
AFFX-r2-Ec-bioC-5_at 1.91800000000000E+002 P 2.44000000000000E-004
AFFX-r2-Ec-bioC-3_at 2.35800000000000E+002 P 2.44000000000000E-004
AFFX-r2-Ec-bioB-M_at 9.28000000000000E+001 P 7.32000000000000E-004
AFFX-r2-Ec-bioB-5_at 5.61000000000000E+001 P 1.22100000000000E-003
AFFX-r2-Ec-bioB-3_at 5.54000000000000E+001 P 2.44000000000000E-004
AFFX-r2-Bs-thr-M_s_at 8.30000000000000E+000 A 5.33936000000000E-001
AFFX-r2-Bs-thr-5_s_at 2.23000000000000E+001 P 1.85550000000000E-002
AFFX-r2-Bs-thr-3_s_at 3.00000000000000E+000 A 7.53906000000000E-001
AFFX-r2-Bs-phe-M_at 1.20000000000000E+000 A 6.65527000000000E-001
AFFX-r2-Bs-phe-5_at 6.00000000000000E-001 A 9.19434000000000E-001
AFFX-r2-Bs-phe-3_at 1.00000000000000E+001 A 3.66211000000000E-001
AFFX-r2-Bs-lys-M_at 3.10000000000000E+000 A 3.66211000000000E-001
AFFX-r2-Bs-lys-5_at 6.90000000000000E+000 A 1.49658000000000E-001
AFFX-r2-Bs-lys-3_at 7.80000000000000E+000 A 2.74170000000000E-001
AFFX-r2-Bs-dap-M_at 1.90000000000000E+000 A 6.65527000000000E-001
AFFX-r2-Bs-dap-5_at 6.00000000000000E+000 A 4.66064000000000E-001

Total number of rows: 22810

Table truncated, full table size 1250 Kbytes.




Supplementary file Size Download File type/resource
GSM133724.CEL.gz 2.2 Mb (ftp)(http) CEL

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