|
| Status |
Public on Feb 27, 2014 |
| Title |
Replicate mir1271-5p |
| Sample type |
SRA |
| |
|
| Source name |
HEK 293 cells
|
| Organism |
Homo sapiens |
| Characteristics |
cell line: HEK 293
|
| Growth protocol |
RISC trap immunoprecipitation (Cambronne, et al 2012 PNAS)
|
| Extracted molecule |
polyA RNA |
| Extraction protocol |
RNA was extracted by trizol
Libraries were prepared with SOlID Total RNA-seq kit (whole transtriptome library size selection).
|
| |
|
| Library strategy |
OTHER |
| Library source |
transcriptomic |
| Library selection |
other |
| Instrument model |
AB SOLiD 4 System |
| |
|
| Description |
Sample2
RISC trap Immunoprecipitation
|
| Data processing |
Library strategy: RISC trap immunoprecipitation
SOLiD data were aligned by Bioscope 2 and tophat2 was used for Illumina data
reads from both strands were count for each gene
Genome_build: hg19
Supplementary_files_format_and_content: tab-delimited text file for mRNA profiling
|
| |
|
| Submission date |
Nov 21, 2013 |
| Last update date |
May 15, 2019 |
| Contact name |
Kenneth S. Kosik |
| Organization name |
UCSB
|
| Department |
NRI
|
| Lab |
Kosik
|
| Street address |
UC Santa Barbara
|
| City |
Santa Barbara |
| State/province |
California |
| ZIP/Postal code |
93106 |
| Country |
USA |
| |
|
| Platform ID |
GPL13393 |
| Series (2) |
| GSE52607 |
Novel primate miRNAs co-evolved with ancient target genes in germinal zone specific expression patterns [RISC trap immunoprecipitation] |
| GSE52608 |
Novel primate miRNAs co-evolved with ancient target genes in germinal zone specific expression patterns |
|
| Relations |
| BioSample |
SAMN02418778 |
| SRA |
SRX381167 |
