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Sample GSM1121842 Query DataSets for GSM1121842
Status Public on Apr 13, 2013
Title plasma-RA 1
Sample type RNA
 
Source name plasma-RA
Organism Homo sapiens
Characteristics gender: female
age (yrs): 71
diagnosis: rheumatoid arthritis
tissue: plasma
Treatment protocol n/a
Growth protocol n/a
Extracted molecule total RNA
Extraction protocol RT2 qPCR-Grade miRNA isolation kit (SABiosciences, Frederick, MD) after twice extration using with Sepasol-RNA II (Nacalai Tesque, Kyoto, Japan), a phenol-based reagent for liquid sample.
Label FAM
Label protocol see manufacturer's website: http://www.appliedbiosystems.com/
 
Hybridization protocol n/a
Scan protocol n/a
Description Test
Data processing The SDS2.2.2 automatically caluculated the uploaded raw threshold cycle data. Normalization was carried out with the average Ct value of all miRNAs. Relative quantification of miRNA expression was calculated with the 2−ΔΔCt Ct method. The data was presented as log10 of the relative quantity of each miRNA. Fold Change worksheet reports test/control (i.e., RA/HC) ratios.
 
Submission date Apr 12, 2013
Last update date Apr 13, 2013
Contact name Koichi Murata
E-mail(s) kchm@kuhp.kyoto-u.ac.jp
Organization name Kyoto University
Department Orthopaedics
Street address 54, Kawahara-cho, Shogoin, Sakyo-ku
City Kyoto
State/province Kyoto
ZIP/Postal code 6068507
Country Japan
 
Platform ID GPL11316
Series (1)
GSE46012 Plasma miRNA Expression Profiling Using Human TaqMan Low Density Array Cards

Data table header descriptions
ID_REF
VALUE normalized data

Data table
ID_REF VALUE
1 2.329897855
2 -5.461308145
3 0.514494855
4 -5.461308145
5 6.282841855
6 3.004991855
7 8.672549855
8 7.020493855
9 0.713981855
10 6.783223855
11 6.736987855
12 5.654833855
13 0.443324855
14 -5.461308145
15 -0.508641145
16 9.141343855
17 1.006631855
18 -5.461308145
19 -5.461308145
20 -5.461308145

Total number of rows: 768

Table truncated, full table size 12 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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