NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM107186 Query DataSets for GSM107186
Status Public on May 31, 2006
Title X176TH (HG-U133A)
Sample type RNA
 
Source name Breast tumor
Organism Homo sapiens
Characteristics Breast tumor tissue
RELAPSE: 0
SURV_RELAPSE: 6.05
DEATH: 0
DEATH_BC: 0
SURV_DEATH: 6.05
SUBTYPE: Basal
ELSTON: 2
See Series GSE1456 record for additional information
Extracted molecule total RNA
Extraction protocol Qiagen RNeasy Mini Kit
Label biotin
Label protocol Approximately 10ug of total RNA was processed to produce biotynylated cRNA targets
 
Hybridization protocol Standard Affymetrix procedure
Scan protocol Standard Affymetrix procedure
Description Series of 159 tumors
Data processing Affymetrix Microarray Suite Version 5.0
 
Submission date Apr 28, 2006
Last update date May 31, 2013
Contact name Alexander Ploner
E-mail(s) Alexander.Ploner@meb.ki.se
Phone ++46-8-524-82329
Fax ++46-8-31 11 01
Organization name Karolinska Institutet
Department Medical Epidemiology and Biostatistics
Street address
City Stockholm
ZIP/Postal code SE-171 77
Country Sweden
 
Platform ID GPL96
Series (1)
GSE1456 Gene expression of breast cancer tissue in a large population-based cohort of Swedish patients
Relations
Reanalyzed by GSE47561

Data table header descriptions
ID_REF Affymetrix ID
VALUE Raw data were normalized by using the global mean method. Probe-set signal values were natural log transformed and scaled by adjusting the mean intensity to a target signal value of log 500.
ABS_CALL The call in an absolute analysis that indicates if the transcript was present (P). absent (A), marginal (M) or no call (NC)

Data table
ID_REF VALUE ABS_CALL
AFFX-BioB-5_at 7.0915986444928 P
AFFX-BioB-M_at 7.91811496963131 P
AFFX-BioB-3_at 7.27217762658838 P
AFFX-BioC-5_at 8.22942352946402 P
AFFX-BioC-3_at 7.8299570332648 P
AFFX-BioDn-5_at 8.22694481062649 P
AFFX-BioDn-3_at 10.0235779909612 P
AFFX-CreX-5_at 10.6191780970687 P
AFFX-CreX-3_at 10.9411735876029 P
AFFX-DapX-5_at 4.74798049745894 A
AFFX-DapX-M_at 4.88233608859711 A
AFFX-DapX-3_at 1.67264517330598 A
AFFX-LysX-5_at 4.46293347264516 A
AFFX-LysX-M_at 4.97323264206890 A
AFFX-LysX-3_at 4.02129563314327 A
AFFX-PheX-5_at 3.85869645004407 A
AFFX-PheX-M_at 3.41060193654106 A
AFFX-PheX-3_at 4.06140796254108 A
AFFX-ThrX-5_at 3.24126109121982 A
AFFX-ThrX-M_at 2.94160282772133 A

Total number of rows: 22283

Table truncated, full table size 648 Kbytes.




Supplementary file Size Download File type/resource
GSM107186.CEL.gz 3.4 Mb (ftp)(http) CEL

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap