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Sample GSM1010756 Query DataSets for GSM1010756
Status Public on Sep 28, 2012
Title HudsonAlpha_ChipSeq_HCT-116_FOSL1_(SC-183)_v042211.1
Sample type SRA
 
Source name HCT-116
Organism Homo sapiens
Characteristics datatype: ChipSeq
datatype description: Chromatin IP Sequencing
antibody antibodydescription: Rabbit polyclonal IgG, epitope mapping at the N-terminus of FOSL1 of human origin. Antibody Target: FOSL1
antibody targetdescription: The Fos gene family consists of 4 members: FOS, FOSB, FOSL1, and FOSL2. These genes encode leucine zipper proteins that can dimerize with proteins of the JUN family, thereby forming the transcription factor complex AP-1. As such, the FOS proteins have been implicated as regulators of cell proliferation, differentiation, and transformation. (provided by RefSeq)
antibody vendorname: Santa Cruz Biotechnology
antibody vendorid: sc-183
controlid: SL12247,SL12246
labexpid: SL12231,SL13068
softwareversion: MACS
cell sex: M
antibody: FOSL1_(SC-183)
antibody antibodydescription: Rabbit polyclonal IgG, epitope mapping at the N-terminus of FOSL1 of human origin. Antibody Target: FOSL1
antibody targetdescription: The Fos gene family consists of 4 members: FOS, FOSB, FOSL1, and FOSL2. These genes encode leucine zipper proteins that can dimerize with proteins of the JUN family, thereby forming the transcription factor complex AP-1. As such, the FOS proteins have been implicated as regulators of cell proliferation, differentiation, and transformation. (provided by RefSeq)
antibody vendorname: Santa Cruz Biotechnology
antibody vendorid: sc-183
treatment: None
treatment description: No special treatment or protocol applies
protocol: v042211.1
protocol description: Faster ChIP protocol & AMpure XP size selection for ChIP-seq (Myers)
controlid: SL12247,SL12246
labexpid: SL12231,SL13068
replicate: 1,2
softwareversion: MACS
Biomaterial provider ATCC
Treatment protocol None
Growth protocol HCT-116_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibTfbs
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer
 
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibTfbs
 
Submission date Sep 28, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL9052
Series (1)
GSE32465 Transcription Factor Binding Sites by ChIP-seq from ENCODE/HAIB
Relations
SRA SRX190212
BioSample SAMN01731641
Named Annotation GSM1010756_hg19_wgEncodeHaibTfbsHct116Fosl1V0422111RawRep1.bigWig
Named Annotation GSM1010756_hg19_wgEncodeHaibTfbsHct116Fosl1V0422111RawRep2.bigWig

Supplementary file Size Download File type/resource
GSM1010756_hg19_wgEncodeHaibTfbsHct116Fosl1V0422111PkRep1.broadPeak.gz 165.4 Kb (ftp)(http) BROADPEAK
GSM1010756_hg19_wgEncodeHaibTfbsHct116Fosl1V0422111PkRep2.broadPeak.gz 269.8 Kb (ftp)(http) BROADPEAK
GSM1010756_hg19_wgEncodeHaibTfbsHct116Fosl1V0422111RawRep1.bigWig 132.1 Mb (ftp)(http) BIGWIG
GSM1010756_hg19_wgEncodeHaibTfbsHct116Fosl1V0422111RawRep2.bigWig 208.3 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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