|
|
GEO help: Mouse over screen elements for information. |
|
Status |
Public on Sep 28, 2012 |
Title |
HudsonAlpha_ChipSeq_HCT-116_FOSL1_(SC-183)_v042211.1 |
Sample type |
SRA |
|
|
Source name |
HCT-116
|
Organism |
Homo sapiens |
Characteristics |
datatype: ChipSeq datatype description: Chromatin IP Sequencing antibody antibodydescription: Rabbit polyclonal IgG, epitope mapping at the N-terminus of FOSL1 of human origin. Antibody Target: FOSL1 antibody targetdescription: The Fos gene family consists of 4 members: FOS, FOSB, FOSL1, and FOSL2. These genes encode leucine zipper proteins that can dimerize with proteins of the JUN family, thereby forming the transcription factor complex AP-1. As such, the FOS proteins have been implicated as regulators of cell proliferation, differentiation, and transformation. (provided by RefSeq) antibody vendorname: Santa Cruz Biotechnology antibody vendorid: sc-183 controlid: SL12247,SL12246 labexpid: SL12231,SL13068 softwareversion: MACS cell sex: M antibody: FOSL1_(SC-183) antibody antibodydescription: Rabbit polyclonal IgG, epitope mapping at the N-terminus of FOSL1 of human origin. Antibody Target: FOSL1 antibody targetdescription: The Fos gene family consists of 4 members: FOS, FOSB, FOSL1, and FOSL2. These genes encode leucine zipper proteins that can dimerize with proteins of the JUN family, thereby forming the transcription factor complex AP-1. As such, the FOS proteins have been implicated as regulators of cell proliferation, differentiation, and transformation. (provided by RefSeq) antibody vendorname: Santa Cruz Biotechnology antibody vendorid: sc-183 treatment: None treatment description: No special treatment or protocol applies protocol: v042211.1 protocol description: Faster ChIP protocol & AMpure XP size selection for ChIP-seq (Myers) controlid: SL12247,SL12246 labexpid: SL12231,SL13068 replicate: 1,2 softwareversion: MACS
|
Biomaterial provider |
ATCC
|
Treatment protocol |
None
|
Growth protocol |
HCT-116_protocol.pdf
|
Extracted molecule |
genomic DNA |
Extraction protocol |
Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibTfbs
|
|
|
Library strategy |
ChIP-Seq |
Library source |
genomic |
Library selection |
ChIP |
Instrument model |
Illumina Genome Analyzer |
|
|
Data processing |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibTfbs
|
|
|
Submission date |
Sep 28, 2012 |
Last update date |
May 15, 2019 |
Contact name |
ENCODE DCC |
E-mail(s) |
encode-help@lists.stanford.edu
|
Organization name |
ENCODE DCC
|
Street address |
300 Pasteur Dr
|
City |
Stanford |
State/province |
CA |
ZIP/Postal code |
94305-5120 |
Country |
USA |
|
|
Platform ID |
GPL9052 |
Series (1) |
GSE32465 |
Transcription Factor Binding Sites by ChIP-seq from ENCODE/HAIB |
|
Relations |
SRA |
SRX190212 |
BioSample |
SAMN01731641 |
Named Annotation |
GSM1010756_hg19_wgEncodeHaibTfbsHct116Fosl1V0422111RawRep1.bigWig |
Named Annotation |
GSM1010756_hg19_wgEncodeHaibTfbsHct116Fosl1V0422111RawRep2.bigWig |
Supplementary file |
Size |
Download |
File type/resource |
GSM1010756_hg19_wgEncodeHaibTfbsHct116Fosl1V0422111PkRep1.broadPeak.gz |
165.4 Kb |
(ftp)(http) |
BROADPEAK |
GSM1010756_hg19_wgEncodeHaibTfbsHct116Fosl1V0422111PkRep2.broadPeak.gz |
269.8 Kb |
(ftp)(http) |
BROADPEAK |
GSM1010756_hg19_wgEncodeHaibTfbsHct116Fosl1V0422111RawRep1.bigWig |
132.1 Mb |
(ftp)(http) |
BIGWIG |
GSM1010756_hg19_wgEncodeHaibTfbsHct116Fosl1V0422111RawRep2.bigWig |
208.3 Mb |
(ftp)(http) |
BIGWIG |
SRA Run Selector |
Raw data are available in SRA |
Processed data provided as supplementary file |
|
|
|
|
|