NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM100572 Query DataSets for GSM100572
Status Public on Jun 07, 2006
Title MPI-138
Sample type RNA
 
Source name Frozen tissue
Organism Homo sapiens
Characteristics sample.ID : MPI-138
Relapse: unk
Age : 53
Sex : male
Morphologic.diagnosis : atypical BL
CD20.expr. : present
CD10.expr. : NA
bcl2.expr. : absent
Ki.67.score : 98
CD5.expr. : NA
bcl6.expr. : present
MYC.Partner : IG-MYC
BCL6.Break : absent
IGH.BCL2.Fusion : absent
Chromosomal.Complexity.Score : 2
Genetic.Group : MYC.simple
AnnArbor.Stage : NA
Lesions : NA
B.Symptoms : NA
Survival.Status : NA
FollowupTime..months. : NA
Radiotherapy : NA
RITUXIMAB : NA
Response.to.treatment : NA
Chemotherapy : NA
Molecular.Diagnosis : mBL
GCB.ABC.signature : GCB
Training.Test : Test
core.BL : no
BL.probability : 1
Extracted molecule total RNA
Label Biotin
 
Description Mature aggressive B-cell lymphoma
Data processing Probe level normalization was done using the calibration and variance stabilization method by Huber et al. (Bioinformatics 2002, PMID: 12169536). Probe-set summarization was performed using the median polish method on the normalized data (Irrizary et al. Nucleic Acids Research 2003, PMID: 12582260).
 
Submission date Mar 15, 2006
Last update date Jun 07, 2006
Contact name Michael Hummel
Organization name Universitätsmedizin Berlin, Campus Benjamin Franklin
Department Institute of Pathology
Street address Hindenburgdamm 30
City Berlin
ZIP/Postal code 12200
Country Germany
 
Platform ID GPL96
Series (1)
GSE4475 A Biologic Definition of Burkitt's Lymphoma from Transcriptional and Genomic Profiling

Data table header descriptions
ID_REF
VALUE Normalized and summarized probeset expression value on additive arcsin (log-like) scale

Data table
ID_REF VALUE
1007_s_at 8.92502562106855
1053_at 8.63118535576361
117_at 7.89874608569996
121_at 9.61782214656015
1255_g_at 6.41280741772905
1294_at 8.21500067037594
1316_at 7.24992605232037
1320_at 7.12824283176895
1405_i_at 6.92794799470955
1431_at 6.17334787886285
1438_at 8.05893713486082
1487_at 8.61294640853203
1494_f_at 7.85662689458074
1598_g_at 9.28419853719055
160020_at 8.93357309200536
1729_at 8.44902379078555
1773_at 7.59985816031128
177_at 7.43375189791817
179_at 10.0188109511248
1861_at 7.54894220001405

Total number of rows: 22283

Table truncated, full table size 604 Kbytes.




Supplementary file Size Download File type/resource
GSM100572.CEL.gz 3.3 Mb (ftp)(http) CEL

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap