NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM100506 Query DataSets for GSM100506
Status Public on Jun 07, 2006
Title MPI-064
Sample type RNA
 
Source name Frozen tissue
Organism Homo sapiens
Characteristics sample.ID : MPI-064
Relapse: no
Age : 66
Sex : female
Morphologic.diagnosis : DLBCL
CD20.expr. : present
CD10.expr. : absent
bcl2.expr. : present
Ki.67.score : 60
CD5.expr. : present
bcl6.expr. : present
MYC.Partner : MYC-negative
BCL6.Break : absent
IGH.BCL2.Fusion : absent
Chromosomal.Complexity.Score : 13
Genetic.Group : MYC.neg
AnnArbor.Stage : I
Lesions : nodal
B.Symptoms : absent
Survival.Status : dead
FollowupTime..months. : 37.5
Radiotherapy : yes
RITUXIMAB : no
Response.to.treatment : CR
Chemotherapy : other
Molecular.Diagnosis : intermediate
GCB.ABC.signature : GCB
Training.Test : Training
core.BL : no
BL.probability : 0.12
Extracted molecule total RNA
Label Biotin
 
Description Mature aggressive B-cell lymphoma
Data processing Probe level normalization was done using the calibration and variance stabilization method by Huber et al. (Bioinformatics 2002, PMID: 12169536). Probe-set summarization was performed using the median polish method on the normalized data (Irrizary et al. Nucleic Acids Research 2003, PMID: 12582260).
 
Submission date Mar 15, 2006
Last update date Jun 28, 2010
Contact name Michael Hummel
Organization name Universitätsmedizin Berlin, Campus Benjamin Franklin
Department Institute of Pathology
Street address Hindenburgdamm 30
City Berlin
ZIP/Postal code 12200
Country Germany
 
Platform ID GPL96
Series (1)
GSE4475 A Biologic Definition of Burkitt's Lymphoma from Transcriptional and Genomic Profiling
Relations
Affiliated with GSE22470

Data table header descriptions
ID_REF
VALUE Normalized and summarized probeset expression value on additive arcsin (log-like) scale

Data table
ID_REF VALUE
1007_s_at 8.95449813868296
1053_at 9.46408548269996
117_at 8.51262084222117
121_at 9.9002305371369
1255_g_at 6.3294015968192
1294_at 8.21695261066761
1316_at 7.23625352984715
1320_at 7.0033528271224
1405_i_at 8.21552684969689
1431_at 6.3561911850328
1438_at 8.10550462551981
1487_at 8.43392228266397
1494_f_at 7.91557155869696
1598_g_at 9.6066818055014
160020_at 8.8701535901128
1729_at 9.03542326191217
1773_at 7.55324328867372
177_at 7.23948542626967
179_at 10.0939461322352
1861_at 7.93720039138169

Total number of rows: 22283

Table truncated, full table size 604 Kbytes.




Supplementary file Size Download File type/resource
GSM100506.CEL.gz 3.5 Mb (ftp)(http) CEL

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap