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| Status |
Public on Jul 18, 2017 |
| Title |
VDR ChIP-seq in human monocytic THP-1 cells |
| Organism |
Homo sapiens |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
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| Summary |
ChIP-seq for VDR in THP-1 cells after stimulation with the the natural VDR ligand 1,25-dihydroxyvitamin D3 (1,25(OH)2D3)
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| Overall design |
THP-1 cells were treated for 2 or 24 h with 100 nM 1,25(OH)2D3 or vehicle before ChIP assay
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| Contributor(s) |
Seuter S, Neme A, Carlberg C |
| Citation(s) |
28712921, 28232093, 28870774, 33753848, 35325193 |
| Submission date |
Nov 02, 2016 |
| Last update date |
Apr 27, 2022 |
| Contact name |
Carsten Carlberg |
| E-mail(s) |
carsten.carlberg@uef.fi
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| Organization name |
University of Eastern Finland
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| Department |
Institute of Biomedicine
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| Street address |
Yliopistonranta 1D
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| City |
Kuopio |
| ZIP/Postal code |
70211 |
| Country |
Finland |
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| Platforms (1) |
| GPL11154 |
Illumina HiSeq 2000 (Homo sapiens) |
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| Samples (12)
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| GSM2371445 |
THP-1, VDR 2 h 1,25(OH)2D3 replicate 2 |
| GSM2371446 |
THP-1, VDR 2 h EtOH replicate 3 |
| GSM2371447 |
THP-1, VDR 2 h 1,25(OH)2D3 replicate 3 |
| GSM2371448 |
THP-1, VDR 24 h EtOH replicate 1 |
| GSM2371449 |
THP-1, VDR 24 h 1,25(OH)2D3 replicate 1 |
| GSM2371450 |
THP-1, VDR 24 h EtOH replicate 2 |
| GSM2371451 |
THP-1, VDR 24 h 1,25(OH)2D3 replicate 2 |
| GSM2371452 |
THP-1, VDR 24 h EtOH replicate 3 |
| GSM2371453 |
THP-1, VDR 24 h 1,25(OH)2D3 replicate 3 |
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| Relations |
| BioProject |
PRJNA352200 |
| SRA |
SRP092443 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE89431_RAW.tar |
1.9 Gb |
(http)(custom) |
TAR (of TDF) |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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