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Series GSE84793 Query DataSets for GSE84793
Status Public on Dec 06, 2016
Title Characterization of hundreds of regulatory landscapes in developing limbs reveals two regimes of chromatin folding [ChIP-seq]
Organism Mus musculus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary Characterization of hundreds of regulatory landscapes in developing limbs reveals two regimes of chromatin folding
 
Overall design ChIP-seq of CTCF, H3K4me1, H3K4me3, H3K27Ac, H3K27me3 and RAD21 on embryonic limb bud.

Bigwig files for data of merged replicates are available on the "Rep1" samples.
 
Contributor(s) Andrey G, Schöpflin R
Citation(s) 27923844
Submission date Jul 25, 2016
Last update date May 15, 2019
Contact name Guillaume Andrey
E-mail(s) guillaume.andrey@unige.ch
Phone +41223795703
Organization name University of Geneva
Department Department of Genetic Medicine and Development
Street address Rue Michel-Servet 1
City Geneva
ZIP/Postal code 1211
Country Switzerland
 
Platforms (2)
GPL17021 Illumina HiSeq 2500 (Mus musculus)
GPL19057 Illumina NextSeq 500 (Mus musculus)
Samples (84)
GSM2251432 CTCF-FL-E105-Wt-Mm-Rep1-L7324-1
GSM2251433 CTCF-FL-E105-Wt-Mm-Rep2-L7325-1
GSM2251434 CTCF-FL-E115-Wt-Mm-Rep1-L8227-1
This SubSeries is part of SuperSeries:
GSE84795 Characterization of hundreds of regulatory landscapes in developing limbs reveals two regimes of chromatin folding
Relations
BioProject PRJNA331166
SRA SRP079686

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE84793_RAW.tar 25.3 Gb (http)(custom) TAR (of BW)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
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