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Series GSE79160 Query DataSets for GSE79160
Status Public on Mar 14, 2016
Title RNA-seq analysis of control and podoplanin knockdown lymphatic endothelial cells
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary To determine the transcriptome changes after podoplanin was knocked down in human lymphatic endothelial cells
 
Overall design Human lymphatic endothelial cells were transfected with control siRNA and podoplanin siRNA (N=2 for each group). After 48 hours, total RNA was isolated and processed for RNA-seq.
 
Contributor(s) Chen W, Panjwani N
Citation(s) 27066737
Submission date Mar 13, 2016
Last update date May 15, 2019
Contact name Noorjahan Panjwani
E-mail(s) noorjahan.panjwani@tufts.edu
Phone 6176366776
Organization name Tufts University
Department Ophthalmology
Street address 136 Harrison Ave
City Boston
State/province MA
ZIP/Postal code 02111
Country USA
 
Platforms (1)
GPL16791 Illumina HiSeq 2500 (Homo sapiens)
Samples (4)
GSM2087132 Control LEC rep1
GSM2087133 Control LEC rep2
GSM2087134 PDPN KD LEC rep1
Relations
BioProject PRJNA315064
SRA SRP071702

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE79160_genes.fpkm_tracking.gz 975.2 Kb (ftp)(http) FPKM_TRACKING
SRA Run SelectorHelp
Processed data are available on Series record
Raw data are available in SRA

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