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Series GSE65420 Query DataSets for GSE65420
Status Public on Feb 03, 2015
Title Genetic and drug perturbation of components in the NFkB signaling pathway in 11-18 cells
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary Through the study of EGFR-mutant lung adenocarcinoma we show that NFkB signaling is rapidly engaged by EGFR oncogene inhibition to promote tumor cell persistence and therapy resistance. Unexpectedly, we found that EGFR oncogene inhibition induced an EGFR-TRAF2-RIP1-IKK complex that stimulated an NFkB-mediated transcriptional survival program. We identified a direct pharmacologic NFkB inhibitor, PBS-1086, that suppressed this adaptive survival program and increased both the magnitude and duration of initial EGFR TKI response in cellular and in vivo tumor models, including a novel patient-derived NSCLC xenograft. These findings unveil NFkB as a critical adaptive survival mechanism engaged in response to EGFR oncogene inhibition and identify PBS-1086 as a promising NFkB inhibitor to eliminate disease persistence and potentially prevent the emergence of resistance in patients.
 
Overall design RNAseq analysis of 11-18 (EGFR-mutant lung adenocarcinoma) cells in the context of drug treatment with erlotinib and/or genetic or pharmacological inactivation of NFkB
 
Citation(s) 25843712
Submission date Jan 29, 2015
Last update date Apr 11, 2022
Contact name Saurabh Asthana
E-mail(s) saurabh.asthana@ucsf.edu
Organization name UCSF
Department Helen Diller Family Comprehensive Cancer Center
Lab Olshen
Street address 1450 Third Street, Room HD276
City San Francisco
State/province CA
ZIP/Postal code 94158
Country USA
 
Platforms (1)
GPL11154 Illumina HiSeq 2000 (Homo sapiens)
Samples (29)
GSM1595839 1118_Veh_r0
GSM1595840 1118_Veh_r1
GSM1595841 1118_Erl_r0
Relations
BioProject PRJNA273960
SRA SRP052950

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE65420_RAW.tar 43.1 Mb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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