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Series GSE33251 Query DataSets for GSE33251
Status Public on May 31, 2012
Title Multiple changes at the mucosal surface are induced by protective SIV vaccination
Organism Macaca mulatta
Experiment type Expression profiling by array
Summary Systemic vaccination with the attenuated virus SIVmac239-∆Nef provides sterilizing or partial protection to rhesus monkeys challenged with WT SIV strains, providing important opportunities to study key immunological components of a protective host response. Here we show that intravenous vaccination with SIVmac239-∆Nef provides two potentially crucial immunological barriers localized at mucosal surfaces that correlate with the vaccine’s protective effects against WT SIVmac251 vaginal challenge: 1) a conditioned and coordinated response from the mucosal epithelium that blunts the early inflammatory and chemotactic signalling cascade that aids virus propagation and expansion; 2) early on-site generation/diversification of SIV-specific Abs from ectopic germinal center-like lymphoid aggregates. This unique host response to WT SIVmac251 in the female reproductive tract of SIVmac239-∆Nef-vaccinated animals points to a multi-layered strategy for a protective host response during immunodeficiency virus exposure—rapid induction of humroal immunity at mucosal surfaces without the deleterious inflammatory side effects tied to innate recognition of virus. This vaccine-induced host response highlights potential key protective mechanisms needed for an effective HIV vaccine
 
Overall design Total RNA was isolated from the cervix of 17 Indian Rhesus macaques (3 uninfected animals; 5 unvaccinated animals 4-5 days post vaginal exposure with SIVmac251; 4 SIVmac239-∆Nef-vaccinated animals before challenge; 5 SIVmac239-∆Nef-vaccinated animals 4-5 days post vaginal exposure with SIVmac251) and prepared for hybridization on Affymetrix GeneChip Rhesus Macaque Genome Arrays. Replicate arrays were performed for a number of the samples to minimize assay noise and significant host genes altered during virus exposure in female reproductive tract tissue were identified by their associated q-values (< 0.2) and fold change in expression (> 1.2).
 
Contributor(s) Smith AJ, Wietgrefe SW, Reilly CS, Duan L, Shang L, Li Q, Johnson PR, Haase AT
Citation(s) 25143442
Submission date Oct 26, 2011
Last update date Oct 01, 2014
Contact name Anthony James Smith
E-mail(s) smit4263@umn.edu
Phone 612-624-9130
Fax 612-626-0623
Organization name University of Minnesota
Department Microbiology
Lab Ashley T. Haase
Street address 420 Delaware Street S.E.
City Minneapolis
State/province MN
ZIP/Postal code 55455
Country USA
 
Platforms (1)
GPL3535 [Rhesus] Affymetrix Rhesus Macaque Genome Array
Samples (17)
GSM822853 31917
GSM822854 34550
GSM822855 34572
Relations
BioProject PRJNA149033

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE33251_Annotated_Transcripts_Unvacc.txt.gz 13.4 Kb (ftp)(http) TXT
GSE33251_Annotated_Transcripts_Vacc.txt.gz 9.1 Kb (ftp)(http) TXT
GSE33251_RAW.tar 163.3 Mb (http)(custom) TAR (of CEL)
Processed data included within Sample table

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