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| Status |
Public on Jun 03, 2009 |
| Title |
Computational and Analytical Framework for Small RNA Profiling by High-Throughput Sequencing (reproducibility) |
| Organism |
Arabidopsis thaliana |
| Experiment type |
Non-coding RNA profiling by high throughput sequencing
|
| Summary |
The purpose of this work was to describe a computational and analytical methodology for profiling small RNA by high-throughput sequencing. The datasets here were used to assess the reproducibility of small RNA datasets produced using Illumina sequencing-by-synthesis technology (SBS).
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| Overall design |
We analyzed the reproducibility of small RNA SBS datasets by comparing libraries generated for biological replicates (rep1 and rep2) and technical replicates (rep2 and rep3).
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| Contributor(s) |
Fahlgren N, Kasschau KD, Carrington JC |
| Citation(s) |
19307293 |
| Submission date |
Feb 03, 2009 |
| Last update date |
May 15, 2019 |
| Contact name |
James C Carrington |
| E-mail(s) |
jcarrington@danforthcenter.org
|
| Phone |
314-587-1202
|
| Organization name |
Donald Danforth Plant Science Center
|
| Lab |
James C. Carrington
|
| Street address |
975 North Warson Road
|
| City |
Saint Louis |
| State/province |
MO |
| ZIP/Postal code |
63132 |
| Country |
USA |
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| Platforms (1) |
| GPL9062 |
Illumina Genome Analyzer (Arabidopsis thaliana) |
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| Samples (3) |
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| This SubSeries is part of SuperSeries: |
| GSE14696 |
Computational and Analytical Framework for Small RNA Profiling by High-Throughput Sequencing |
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| Relations |
| SRA |
SRP001000 |
| BioProject |
PRJNA114411 |
