 |
 |
GEO help: Mouse over screen elements for information. |
|
| Status |
Public on Jan 14, 2009 |
| Title |
Expression data in Arabidopsis upf1-1 and upf3-1 mutants. |
| Organism |
Arabidopsis thaliana |
| Experiment type |
Expression profiling by genome tiling array
|
| Summary |
We applied the tiling arrays to study the Arabidopsis whole-genome transcriptome in Arabidopsis upf1-1 and upf3-1 mutants.
Keywords: untreated condition
|
| |
|
| Overall design |
Fifteen-day-old Arabidopsis plants grown on the agar plates. The total RNA was prepared from 15-day-old Arabidopsis plants (wild type (WT, UPF), upf1-1 and upf3-1) and used for the microarray hybridization. Three replicative hybridization experiments for each strand array were carried out using the independent biological RNA samples.
|
| |
|
| Contributor(s) |
Kurihara Y, Matsui A, Ishida J, Kawashima M, Tanaka M, Morosawa T, Mochizuki Y, Shinozaki K, Toyoda T, Seki M |
| Citation(s) |
19181858 |
| Submission date |
Jul 14, 2008 |
| Last update date |
May 09, 2017 |
| Contact name |
Motoaki Seki |
| E-mail(s) |
motoaki.seki@riken.jp
|
| Organization name |
RIKEN CSRS
|
| Street address |
1-7-22, Suehiro-cho, Tsurumi
|
| City |
Yokohama |
| ZIP/Postal code |
230-0045 |
| Country |
Japan |
| |
|
| Platforms (2) |
| GPL10977 |
[At35b_MR] Affymetrix Arabidopsis Tiling 1.0R Array |
| GPL10978 |
[At35b_MF] Affymetrix Arabidopsis Tiling 1.0F Array |
|
| Samples (18)
|
| GSM305333 |
WT-1F_Untreated plants, biological rep1 |
| GSM305334 |
WT-2F_Untreated plants, biological rep2 |
| GSM305335 |
WT-3F_Untreated plants, biological rep3 |
| GSM305336 |
upf1-1-1F_Untreated plants, biological rep1 |
| GSM305337 |
upf1-1-2F_Untreated plants, biological rep2 |
| GSM305338 |
upf1-1-3F_Untreated plants, biological rep3 |
| GSM305339 |
upf3-1-1F_Untreated plants, biological rep1 |
| GSM305340 |
upf3-1-2F_Untreated plants, biological rep2 |
| GSM305341 |
upf3-1-3F_Untreated plants, biological rep3 |
| GSM305342 |
WT-1R_Untreated plants, biological rep1 |
| GSM305343 |
WT-2R_Untreated plants, biological rep2 |
| GSM305344 |
WT-3R_Untreated plants, biological rep3 |
| GSM305345 |
upf1-1-1R_Untreated plants, biological rep1 |
| GSM305346 |
upf1-1-2R_Untreated plants, biological rep2 |
| GSM305347 |
upf1-1-3R_Untreated plants, biological rep3 |
| GSM305348 |
upf3-1-1R_Untreated plants, biological rep1 |
| GSM305349 |
upf3-1-2R_Untreated plants, biological rep2 |
| GSM305350 |
upf3-1-3R_Untreated plants, biological rep3 |
|
| Relations |
| BioProject |
PRJNA113789 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE12101_RAW.tar |
1.6 Gb |
(http)(custom) |
TAR (of CEL, TXT) |
| Processed data provided as supplementary file |
|
|
|
|
 |
Less...
More...