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Platform GPL8012 Query DataSets for GPL8012
Status Public on Aug 01, 2009
Title [Syel6301a520114F] Affymetrix Custom GeneChip Synechococcus 2515 ORFs v1.0
Technology type in situ oligonucleotide
Distribution non-commercial
Organisms Synechococcus elongatus PCC 7942 = FACHB-805; Synechococcus elongatus PCC 6301
Manufacturer Affymetrix
Manufacture protocol Affymetrix prokaryotic array protocol (see Affymetrix website)
 
 
Submission date Dec 29, 2008
Last update date May 16, 2013
Contact name Hideo Iwasaki
E-mail(s) hideo-iwasaki@waseda.jp
Organization name Waseda University
Department Electrical Engineering & Bioscience
Street address TWIns 1F 2-2 Wakamatsu-cho, Shinjuku
City Tokyo
ZIP/Postal code 162-8480
Country Japan
 
Samples (205) GSM356401, GSM356402, GSM356403, GSM356404, GSM356405, GSM356406 
Series (7)
GSE14225 Circadian and diurnal expression data of Synechococcus
GSE22468 Nocturnal expression data of Synechococcus in WT and kaiABC-null strains
GSE28430 Circadian expression data of Synechococcus in WT, rpoD6-null, sasA-null and rpaA-null strains

Data table header descriptions
ID
7942_ID S. elongatus PCC 7942 gene ID (cf. Complete Genomic Sequence GenBank Accession number NC_007604)
6301_ID S. elongatus PCC 6301 gene ID of sequence used to design oligonucleotide probe (cf. Complete Genomic Sequence GenBank Accession number NC_006576)
SYMBOL Gene symbol name
ORF
DESCRIPTION Gene description

Data table
ID 7942_ID 6301_ID SYMBOL ORF DESCRIPTION
syc0001-h_at Synpcc7942_1541 syc0001_c isiB syc0001 flavodoxin
syc0002-h_at Synpcc7942_1542 syc0002_c isiA syc0002 iron-stress chlorophyll-binding protein
syc0003-m_at Synpcc7942_1544 syc0003_d syc0003 panthotenate metabolism flavoprotein
syc0004-m_at Synpcc7942_1545 syc0004_d syc0004 similar to plasmid stabilization protein StbB homolog
syc0005-m_at Synpcc7942_1546 syc0005_d syc0005 similar to C termimus of tlr0652 (putative ribonuclease II)
syc0006-h_at Synpcc7942_1548 syc0006_c syc0006 probable amidase
syc0007-m_at Synpcc7942_1549 syc0007_d umuD syc0007 DNA polymerase V putative SOS mutagenesis protein UmuD
syc0008-m_at Synpcc7942_1550 syc0008_d umuC syc0008 DNA polymerase V
syc0009-m_at Synpcc7942_1551 syc0009_d syc0009 hypothetical protein
syc0010-h_at Synpcc7942_1552 syc0010_c ilvC syc0010 ketol-acid reductoisomerase
syc0011-m_at Synpcc7942_1553 syc0011_d syc0011 hypothetical protein
syc0012-h_at Synpcc7942_1554 syc0012_c clpP syc0012 ATP-dependent protease ClpP
syc0013-m_at Synpcc7942_1555 syc0013_d syc0013 hypothetical protein
syc0014-m_at Synpcc7942_1556 syc0014_d syc0014
syc0015-h_at Synpcc7942_1557 syc0015_c rpoD6 syc0015 group 2 RNA polymerase sigma factor
syc0016-m_at Synpcc7942_1558 syc0016_d syc0016
syc0017-m_at Synpcc7942_1559 syc0017_d syc0017 hypothetical protein
syc0018-m_at Synpcc7942_1560 syc0018_d syc0018
syc0019-h_at Synpcc7942_1561 syc0019_c syc0019
syc0020-h_at Synpcc7942_1562 syc0020_c syc0020 hypothetical protein

Total number of rows: 2515

Table truncated, full table size 191 Kbytes.




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Supplementary file Size Download File type/resource
GPL8012_ProbeSequenceFile_ReadMe.txt.gz 654 b (ftp)(http) TXT
GPL8012_Syel6301a520114F.cdf.gz 2.9 Mb (ftp)(http) CDF
GPL8012_Syel6301a520114F_probeSequences.txt.gz 1.7 Mb (ftp)(http) TXT

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