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Platform GPL6423 Query DataSets for GPL6423
Status Public on Nov 09, 2008
Title MacLeod custom equine cartilage cDNA microarray
Technology type spotted DNA/cDNA
Distribution non-commercial
Organism Equus caballus
Manufacturer W.M. Keck Center, University of Illinois Urbana-Champaign
Manufacture protocol The cDNAs were spotted in 3x SSC buffer supplemented with 1.5 M betaine
Support glass
Coating aminosilane
 
Description The 9,322 cDNAs spotted on this microarray were obtained from a normalized and subtracted cDNA library generated from the total RNA of articular cartilage from a 15-month old equine Thoroughbred gelding. In addition, cDNAs from 28 plasmids used within the lab were spotted; 2 plasmids have been submitted to GenBank. Positive control spots include Elongation Factor Tu (EFTu) and glyceraldehyde-3-phosphate dehydrogenase (GAPDH). Negative control spots are the soybean genes chlorophyll ab binding protein (CAB - SPOT_ID: ABbinding) and Rubisco small chain 1 (RBS1 - SPOT_ID: Rubisco). Other spots might be identified as empty of buffer. Keywords: cDNA, equine, articular cartilage, microarray
 
Web link http://macleod.uky.edu/equine
Contributor(s) MacLeod JN, Band MR, Sun Q, Coleman SJ, Mienaltowski MJ, Miura N
Submission date Jan 26, 2008
Last update date Nov 09, 2008
Contact name Michael J. Mienaltowski
E-mail(s) M.Mski@uky.edu, mmienalt@health.usf.edu
Phone 8592574757
Organization name University of Kentucky
Department Veterinary Science
Lab MacLeod Laboratory
Street address 108 Gluck Equine Research Center
City Lexington
State/province KY
ZIP/Postal code 40546
Country USA
 
Samples (25) GSM260356, GSM260358, GSM260361, GSM260363, GSM297844, GSM297845 
Series (4)
GSE10303 Differential Gene Expression Associated With Postnatal Articular Cartilage Maturation
GSE11760 Transcriptional profiling differences for articular cartilage and repair tissue in equine joint surface lesions.
GSE14255 Transcriptional profiling of equine chondrocyte de-differentiation in culture

Data table header descriptions
ID
Microarray_ID Microarray ID number
GB_ACC GenBank Accession ID
SPOT_ID identifies rows without a GenBank Accession

Data table
ID Microarray_ID GB_ACC SPOT_ID
1 CT010001000A02 CX592099.1
2 CT010001000A03 CX592100.1
3 CT010001000A04 CX592101.1
4 CT010001000A05 CX592102.1
5 CT010001000A06 CX592103.1
6 CT010001000A07 CX592104.1
7 CT010001000A09 CX592106.1
8 CT010001000A10 CX592107.1
9 CT010001000A11 CX592108.1
10 CT010001000A12 CX592109.1
11 CT010001000B01 CX592110.1
12 CT010001000B02 CX592111.1
13 CT010001000B03 CX592112.1
14 CT010001000B05 CX592114.1
15 CT010001000B06 CX592115.1
16 CT010001000B07 CX592116.1
17 CT010001000B08 CX592117.1
18 CT010001000B09 CX592118.1
19 CT010001000B10 CX592119.1
20 CT010001000B12 CX592121.1

Total number of rows: 9406

Table truncated, full table size 280 Kbytes.




Download family Format
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Supplementary file Size Download File type/resource
GPL6423.gal.gz 85.0 Kb (ftp)(http) GAL

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