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Platform GPL5306 Query DataSets for GPL5306
Status Public on May 25, 2007
Title AFFY Human Phase3 v1.0 - C73
Technology type in situ oligonucleotide
Distribution non-commercial
Organism Homo sapiens
Manufacturer Affymetrix
Manufacture protocol Affymetrix standard array manufacture protocol.
Please refer to http://www.affymetrix.com/technology/manufacturing/index.affx for details.
 
 
Web link http://transcriptome.affymetrix.com/publication/hs_whole_genome
Submission date May 23, 2007
Last update date Jul 30, 2007
Contact name Thomas R Gingeras
E-mail(s) tom_gingeras@affymetrix.com
Organization name Affymetrix, Inc.
Street address 3380 Central Expressway
City Santa Clara
State/province CA
ZIP/Postal code 95051
Country USA
 
Samples (14) GSM191311, GSM191587, GSM191860, GSM192133, GSM192403, GSM192676 
Series (1)
GSE7576 RNA Maps Reveal New RNA Classes and a Possible Function for Pervasive Transcription

Data table header descriptions
ID chip_coord_genomic_coord
CHIP_COORD chip coordinate
SEQUENCE probe sequence
RANGE_GB chromosome accession and version upon which probes are mapped
RANGE_START start position of mapped probe relative to RANGE_GB
RANGE_END end position of mapped probe relative to RANGE_GB
RANGE_STRAND chromosomal stand

Data table
ID CHIP_COORD SEQUENCE RANGE_GB RANGE_START RANGE_END RANGE_STRAND
x164_y2293_chr1_116869 x164_y2293 AGTTTTAATACGTCAGAGTTACTGA NC_000001.8 116869 116893 +
x525_y1557_chr1_116875 x525_y1557 ATGGAAAGTTTTAATACGTCAGAGT NC_000001.8 116875 116899 +
x1601_y2035_chr1_116880 x1601_y2035 GTAGCATGGAAAGTTTTAATACGTC NC_000001.8 116880 116904 +
x1337_y1549_chr1_116881 x1337_y1549 TGTAGCATGGAAAGTTTTAATACGT NC_000001.8 116881 116905 +
x994_y1357_chr1_116885 x994_y1357 TTTATGTAGCATGGAAAGTTTTAAT NC_000001.8 116885 116909 +
x2008_y2487_chr1_116886 x2008_y2487 ATTTATGTAGCATGGAAAGTTTTAA NC_000001.8 116886 116910 +
x2009_y2487_chr1_116886 x2009_y2487 ATTTATGTAGCATGGAAAGTTTTAA NC_000001.8 116886 116910 +
x342_y479_chr1_116890 x342_y479 TCAGATTTATGTAGCATGGAAAGTT NC_000001.8 116890 116914 +
x574_y427_chr1_116891 x574_y427 TTCAGATTTATGTAGCATGGAAAGT NC_000001.8 116891 116915 +
x1071_y1077_chr1_116895 x1071_y1077 AGTTTTCAGATTTATGTAGCATGGA NC_000001.8 116895 116919 +
x567_y731_chr1_116896 x567_y731 GAGTTTTCAGATTTATGTAGCATGG NC_000001.8 116896 116920 +
x2501_y1983_chr1_116900 x2501_y1983 AATAGAGTTTTCAGATTTATGTAGC NC_000001.8 116900 116924 +
x1582_y1855_chr1_116901 x1582_y1855 AAATAGAGTTTTCAGATTTATGTAG NC_000001.8 116901 116925 +
x1559_y283_chr1_116905 x1559_y283 TGTGAAATAGAGTTTTCAGATTTAT NC_000001.8 116905 116929 +
x1284_y1175_chr1_116906 x1284_y1175 ATGTGAAATAGAGTTTTCAGATTTA NC_000001.8 116906 116930 +
x1023_y2269_chr1_116910 x1023_y2269 TTTTATGTGAAATAGAGTTTTCAGA NC_000001.8 116910 116934 +
x790_y1881_chr1_116911 x790_y1881 GTTTTATGTGAAATAGAGTTTTCAG NC_000001.8 116911 116935 +
x1077_y1667_chr1_116916 x1077_y1667 CTCCAGTTTTATGTGAAATAGAGTT NC_000001.8 116916 116940 +
x1078_y1667_chr1_116916 x1078_y1667 CTCCAGTTTTATGTGAAATAGAGTT NC_000001.8 116916 116940 +
x110_y1231_chr1_116921 x110_y1231 TTCAGCTCCAGTTTTATGTGAAATA NC_000001.8 116921 116945 +

Total number of rows: 3959283

Table truncated, full table size 368126 Kbytes.




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Supplementary file Size Download File type/resource
GPL5306.tpmap.bz2 54.0 Mb (ftp)(http) TPMAP

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