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Platform GPL4139 Query DataSets for GPL4139
Status Public on Jan 01, 2007
Title Nimblegen 14.6M Human tiling array of hg17 at 100bp resolution v1.0 set 04 of 38
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Homo sapiens
Manufacturer Nimblegen Systems Inc.
Manufacture protocol Whole human genome tiling arrays and the design principle of this array has been described previously (Kim et al., 2005b).
 
Description The 38 genome scan arrays were based on NCBI35 build of the human genome (hg17) and contained a total of 14,628,366 50-mer oligonucleotides, positioned at every 100 basepairs (bp) throughout the human genome as described in the oligonucleotide array description files. There are a total of 38 arrays. This is set 04.
 
Web link http://www.nimblegen.com/
Contributor(s) Kim TH, Abdullayev Z, Ching KA, Smith A, Loukinov D, Green RD, Zhang MQ, Lobanenkov V, Ren B
Submission date Aug 17, 2006
Last update date May 23, 2007
Contact name Bing Ren
E-mail(s) biren@ucsd.edu
Organization name Ludwig Institute for Cancer Research
Department Department of Cellular and Molecular Medicine
Lab Laboratory of Gene Regulation
Street address 9500 Gilman Drive
City La Jolla
State/province CA
ZIP/Postal code 92093-0653
Country USA
 
Samples (2) GSM129191, GSM353113
Series (2)
GSE5559 Analysis of the vertebrate insulator protein CTCF binding sites in the human genome
GSE14083 Global Chromatin Modifications at Enhancers Correlate with Cell Type-Specific Gene Expression in the Human Genome

Data table header descriptions
ID PROBE_DESIGN_ID
PROBE_ID
SEQUENCE SEQUENCE UCSC hg17
RANGE_ACCESSION
RANGE_START
RANGE_END

Data table
ID PROBE_ID SEQUENCE RANGE_ACCESSION RANGE_START RANGE_END
2034_0001_0001 chr2P7092734 TACGATATTATTTCCTTTTTTTCCTATATATTTGCAAGATCATTGACCTG NC_000002.9 7092734 7092783
2034_0004_0001 CPK6 TGAGTTGTTTGATAGGATTATTCATAGAGGTCATTACAGCGAGAGGAANNNNNNNNN
2034_0006_0001 CPK6 TGAGTTGTTTGATAGGATTATTCATAGAGGTCATTACAGCGAGAGGAANNNNNNNNN
2034_0008_0001 CPK6 TGAGTTGTTTGATAGGATTATTCATAGAGGTCATTACAGCGAGAGGAANNNNNNNNN
2034_0010_0001 CPK6 TGAGTTGTTTGATAGGATTATTCATAGAGGTCATTACAGCGAGAGGAANNNNNNNNN
2034_0012_0001 CPK6 TGAGTTGTTTGATAGGATTATTCATAGAGGTCATTACAGCGAGAGGAANNNNNNNNN
2034_0014_0001 CPK6 TGAGTTGTTTGATAGGATTATTCATAGAGGTCATTACAGCGAGAGGAANNNNNNNNN
2034_0016_0001 CPK6 TGAGTTGTTTGATAGGATTATTCATAGAGGTCATTACAGCGAGAGGAANNNNNNNNN
2034_0018_0001 CPK6 TGAGTTGTTTGATAGGATTATTCATAGAGGTCATTACAGCGAGAGGAANNNNNNNNN
2034_0020_0001 CPK6 TGAGTTGTTTGATAGGATTATTCATAGAGGTCATTACAGCGAGAGGAANNNNNNNNN
2034_0022_0001 CPK6 TGAGTTGTTTGATAGGATTATTCATAGAGGTCATTACAGCGAGAGGAANNNNNNNNN
2034_0025_0001 chr2P44856392 GCAGAATTTCTCCTCCAAATTGGAGATGTGGAATAAGAGTAGTGACAGAT NC_000002.9 44856392 44856441
2034_0027_0001 chr2P21585858 TAATTACATTAGAGTGATAAGGTTAGCAGCAGAAGTACATTCAAGGCAGC NC_000002.9 21585858 21585907
2034_0029_0001 chr2P69251582 CCACTGATTTTTGAAGTGGCTCCTGCAGAGACTGTGTTAGTGGATGTTCC NC_000002.9 69251582 69251631
2034_0031_0001 chr2P55725761 GCTGGCTTTCTGAAAGACACATCATAAGCTGCTTTTTTCCTTTTTTTTCC NC_000002.9 55725761 55725810
2034_0033_0001 chr2P27857053 TAGCCCCACAGCTTTGCAGAGCCTGACAAAGGCAAGAAACTGTCACATGT NC_000002.9 27857053 27857102
2034_0035_0001 chr2P52921885 ATCATAACAATATTTCCTTTCGAGCTACTGTTTCTTAAGGCATTGGAATG NC_000002.9 52921885 52921934
2034_0037_0001 chr2P43583122 TTTGTCTGGCCATACATTCCTCCGGAGCACTAACCTTGACACCAAGAACA NC_000002.9 43583122 43583171
2034_0039_0001 chr2P4183059 GCACTCCTAAACATTTGGAGTTACTTTTTTTCCCCTTTCTTTTTGTATCT NC_000002.9 4183059 4183108
2034_0041_0001 RANDOM00000517 CATAAGAGCACCCCACACAAGGTGTGTTGGGTAATCAAGGAGATACAGGC

Total number of rows: 391015

Table truncated, full table size 41591 Kbytes.




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Supplementary data files not provided
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