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Platform GPL4129 Query DataSets for GPL4129
Status Public on Aug 17, 2006
Title Agilent-014717 Mouse Promoter ChIP-on-Chip Set 244K, Microarray 2 of 2 (G4490A) (Feature Number version)
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Mus musculus
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
Catalog number G4490A
 
Description
Mouse Promoter ChIP-on-Chip Set 244K 2 of 2

Arrays of this design have barcodes that begin with 16014717 or 2514717.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

***** A different version of this platform with the Agilent Probe names in the ID column is assigned accession number GPL14597.

 
Submission date Aug 17, 2006
Last update date Dec 06, 2012
Organization Agilent Technologies
E-mail(s) cag_sales-na@agilent.com
Phone 877-424-4536
URL http://www.agilent.com
Department
Street address
City Palo Alto
State/province CA
ZIP/Postal code 94304
Country USA
 
Samples (88) GSM189180, GSM189183, GSM189333, GSM189335, GSM189337, GSM189339 
Series (23)
GSE7815 Histone H3K4 and H3K27 trimethylation analysis in ES cells, Mefs and induced pluriptent cells.
GSE9572 Microarray-based global mapping of integration sites of retrotransposon, intracisternal A-particle, in mouse genome
GSE12482 Sall4 regulates distinct transcription circuitries in different blastocyst-derived stem cell lineages
Relations
Alternative to GPL14597 (Probe Name version)
Alternative to GPL7777
Alternative to GPL7793

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
SPOT_ID Spot identifier
CONTROL_TYPE Control type
GB_ACC GenBankAccession
GENE_SYMBOL Gene Symbol
GENE_NAME Gene Name
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
CYTOBAND Cytoband
DESCRIPTION Description
GB_RANGE NCBI Build 35.1 Accession.Version[start..end]

Data table
ID COL ROW SPOT_ID CONTROL_TYPE GB_ACC GENE_SYMBOL GENE_NAME ACCESSION_STRING CHROMOSOMAL_LOCATION CYTOBAND DESCRIPTION GB_RANGE
1 267 912 MmCGHBrightCorner pos
2 267 910 DarkCorner pos
3 267 908 DarkCorner pos
4 267 906 A_68_P30405827 FALSE NM_145476 Tbc1d22a ref|NM_145476|ref|Tbc1d22a:602|mgc|BC066009:602 chr15:086297403-086297448 INSIDE NC_000081.3[086297403..086297448]
5 267 904 A_68_P27927230 FALSE NM_008850 Pitpna ref|NM_008850|ref|Pitpna:39347|mgc|BC056171:39302 chr11:075709001-075709056 INSIDE NC_000077.3[075709001..075709056]
6 267 902 A_68_P30013681 FALSE NM_008537 Amacr ref|NM_008537|ref|Amacr:14414|mgc|BC015825:14331 chr15:011054431-011054485 INSIDE NC_000081.3[011054431..011054485]
7 267 900 A_68_P30742419 FALSE NM_198297 Trat1 ref|NM_198297|ref|Trat1:783|mgc|BC104350:604 chr16:048532046-048532105 INSIDE NC_000082.3[048532046..048532105]
8 267 898 A_68_P29059429 FALSE NM_012015 H2afy ref|NM_012015|ref|H2afy:29|ens|ENSMUST00000045788:-7019|mgc|BC006955:8 chr13:055224486-055224530 INSIDE NC_000079.3[055224486..055224530]
9 267 896 A_68_P31953160 FALSE NM_023044 Slc15a3 ref|NM_023044|ref|Slc15a3:-279|mgc|BC051940:-608 chr19:010522367-010522411 PROMOTER NC_000085.3[010522367..010522411]
10 267 894 A_68_P30533482 FALSE NM_025708 4432406C05Rik ref|NM_025708|ref|4432406C05Rik:4030|ref|NM_016881:-4035|ens|ENSMUST00000064197:-8352|mgc|BC027261:3860 chr16:008307291-008307350 DOWNSTREAM NC_000082.3[008307291..008307350]
11 267 892 A_68_P28049269 FALSE NM_008379 Kpnb1 ref|NM_008379|ref|Kpnb1:-3836|mgc|BC052438:-4081 chr11:097300741-097300793 PROMOTER NC_000077.3[097300741..097300793]
12 267 890 A_68_P27796686 FALSE NM_029976 D11Ertd497e ref|NM_029976|ref|D11Ertd497e:-2039|ens|ENSMUST00000020659:-2039|ens|ENSMUST00000082536:530 chr11:051922351-051922410 PROMOTER NC_000077.3[051922351..051922410]
13 267 888 A_68_P28265618 FALSE NM_172950 Lpin1 ref|NM_172950|ref|Lpin1:-1331|ens|ENSMUST00000048538:-1352|ens|ENSMUST00000067124:19865 chr12:016645664-016645709 PROMOTER NC_000078.3[016645664..016645709]
14 267 886 A_68_P32030727 FALSE NM_177360 Dmrt3 ref|NM_177360|ref|Dmrt3:1017|mgc|BC052041:1011 chr19:025311513-025311572 INSIDE NC_000085.3[025311513..025311572]
15 267 884 A_68_P27917509 FALSE NM_147023 Olfr385 ref|NM_147023|ref|Olfr385:945|ens|ENSMUST00000071553:945 chr11:073670336-073670395 DOWNSTREAM NC_000077.3[073670336..073670395]
16 267 882 A_68_P31185610 FALSE mgc|BC089564:-5108 chr17:040744085-040744144 Unknown NC_000083.3[040744085..040744144]
17 267 880 A_68_P30686504 FALSE NM_172380 9630046K23Rik ref|NM_172380|ref|9630046K23Rik:27112|ens|ENSMUST00000089577:67710|mgc|BC026809:27135 chr16:038234176-038234229 INSIDE NC_000082.3[038234176..038234229]
18 267 878 A_68_P30954069 FALSE NM_009384 Tiam1 ref|NM_009384|ref|Tiam1:-649|ens|ENSMUST00000002588:-649|ens|ENSMUST00000089086:13223 chr16:090011374-090011433 PROMOTER NC_000082.3[090011374..090011433]
19 267 876 A_68_P27953568 FALSE NM_139228 Rhbdl3 ref|NM_139228|ref|Rhbdl3:-1166|mgc|BC054784:-1166 chr11:080381455-080381514 PROMOTER NC_000077.3[080381455..080381514]
20 267 874 A_68_P29937464 FALSE NM_145464 Sox21 ref|NM_145464|ref|Sox21:1587|ref|NM_177753:1641 chr14:112636878-112636928 INSIDE NC_000080.3[112636878..112636928]

Total number of rows: 243504

Table truncated, full table size 43977 Kbytes.






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