 |
 |
GEO help: Mouse over screen elements for information. |
|
| Status |
Public on Apr 21, 2005 |
| Title |
AtTile1R to Arabidopsis Tiling 1.0R |
| Technology type |
in situ oligonucleotide |
| Distribution |
custom-commercial |
| Organism |
Arabidopsis thaliana |
| Manufacturer |
Affymetrix |
| Manufacture protocol |
see manufacturer's web site
|
| |
|
| Description |
Affymetrix Whole Genome Tiling Array Chip designed by the Salk Institute and Affymetrix.
|
| |
|
| Contributor(s) |
Chen H, Yazaki J, Ecker JR |
| Submission date |
Apr 20, 2005 |
| Last update date |
Sep 04, 2008 |
| Contact name |
Joseph R. Ecker |
| E-mail(s) |
ecker@salk.edu
|
| Phone |
1-858-453-4100 x 1975
|
| URL |
http://signal.salk.edu/
|
| Organization name |
The Salk Institute
|
| Department |
Genomic Analysis Laboratory
|
| Lab |
Joseph R. Ecker
|
| Street address |
10010 N. Torrey Pines Road
|
| City |
La Jolla |
| State/province |
CA |
| ZIP/Postal code |
92037 |
| Country |
USA |
| |
|
| Samples (78)
|
GSM113723, GSM114159, GSM114161, GSM114163, GSM114165, GSM114167
GSM114169, GSM114171, GSM114173, GSM278882, GSM278883, GSM278887, GSM278933, GSM278934, GSM278947, GSM278948, GSM279009, GSM279050, GSM279051, GSM279052, GSM279053, GSM341613, GSM341614, GSM341615, GSM341616, GSM341617, GSM341618, GSM341619, GSM341620, GSM341621, GSM341622, GSM341623, GSM341624, GSM341625, GSM341626, GSM341627, GSM341628, GSM341629, GSM341630, GSM341631, GSM341632, GSM341633, GSM341634, GSM341635, GSM341636, GSM341637, GSM341638, GSM341639, GSM341640, GSM341641, GSM341642, GSM341643, GSM341644, GSM341645, GSM341646, GSM341647, GSM341703, GSM341704, GSM341705, GSM341706, GSM347459, GSM347468, GSM347469, GSM347588, GSM347589, GSM347590, GSM347591, GSM347592, GSM347593, GSM347594, GSM347595, GSM347596, GSM628107, GSM628108, GSM628109, GSM628110, GSM628111, GSM628112
|
| Series (5)
|
| GSE5074 |
High Resolution Mapping and Functional Analysis of the Methylome in Arabidopsis (polyA RNA) |
| GSE11043 |
Dual roles of the nuclear cap binding complex and SERRATE in pre-mRNA splicing and microRNA processing in Arabidopsis |
| GSE13584 |
Stress-induced changes in the Arabidopsis thaliana transcriptome analyzed using whole genome tiling arrays |
| GSE13814 |
Exploring the transcriptional landscape of plant circadian rhythms using genome tiling arrays |
| GSE25553 |
Global Nucleosome Positioning in Arabidopsis using whole genome Tiling Microarray |
|
| Data table header descriptions |
| ID |
unique id; derived from perfect match chip coordinate, chromosome, and range start |
| SEQUENCE |
Oligo probe sequence |
| Chromosome |
Arabidopsis chromosome |
| RANGE_START |
start position of mapped probe relative to RANGE_GB |
| RANGE_END |
end position of mapped probe relative to RANGE_GB |
| RANGE_GB |
chromosome accession and version upon which probes are mapped |
| RANGE_STRAND |
chromosomal strand |
| PROBE |
PerfectMatch (PM) or MisMatch (MM) probe |
| Data table |
| ID |
SEQUENCE |
Chromosome |
RANGE_START |
RANGE_END |
RANGE_GB |
RANGE_STRAND |
PROBE |
| x1086_y1302_r2_Tag_2 |
GTGATAATTTCGACGAGGCGTTACA |
r2_Tag |
2 |
26 |
|
+ |
PM |
| x1087_y1302_r2_Tag_2 |
GTGATAATTTCGTCGAGGCGTTACA |
r2_Tag |
2 |
26 |
|
+ |
MM |
| x1086_y1301_r2_Tag_10 |
TTCGACGAGGCGTTACATATTCTGA |
r2_Tag |
10 |
34 |
|
+ |
PM |
| x1087_y1301_r2_Tag_10 |
TTCGACGAGGCGATACATATTCTGA |
r2_Tag |
10 |
34 |
|
+ |
MM |
| x1098_y1294_r2_Tag_22 |
CAGTACATGGTAGTTCAGCCAATAG |
r2_Tag |
22 |
46 |
|
+ |
PM |
| x1099_y1294_r2_Tag_22 |
CAGTACATGGTACTTCAGCCAATAG |
r2_Tag |
22 |
46 |
|
+ |
MM |
| x1086_y1291_r2_Tag_28 |
ATGACGCGGAGTCAACCTGATAACC |
r2_Tag |
28 |
52 |
|
+ |
PM |
| x1087_y1291_r2_Tag_28 |
ATGACGCGGAGTGAACCTGATAACC |
r2_Tag |
28 |
52 |
|
+ |
MM |
| x1088_y1297_r2_Tag_34 |
TACGGCGGTTGACTTAGTTATGCGA |
r2_Tag |
34 |
58 |
|
+ |
PM |
| x1089_y1297_r2_Tag_34 |
TACGGCGGTTGAGTTAGTTATGCGA |
r2_Tag |
34 |
58 |
|
+ |
MM |
| x1098_y1293_r2_Tag_36 |
TCAGCCAATAGATGCCTAGTACGCT |
r2_Tag |
36 |
60 |
|
+ |
PM |
| x1099_y1293_r2_Tag_36 |
TCAGCCAATAGAAGCCTAGTACGCT |
r2_Tag |
36 |
60 |
|
+ |
MM |
| x1088_y1296_r2_Tag_40 |
GGTTGACTTAGTTATGCGAGGTTCG |
r2_Tag |
40 |
64 |
|
+ |
PM |
| x1089_y1296_r2_Tag_40 |
GGTTGACTTAGTAATGCGAGGTTCG |
r2_Tag |
40 |
64 |
|
+ |
MM |
| x1102_y1306_r2_Tag_47 |
TGGTGGAGCTATATAAGCCGCTGTT |
r2_Tag |
47 |
71 |
|
+ |
PM |
| x1103_y1306_r2_Tag_47 |
TGGTGGAGCTATTTAAGCCGCTGTT |
r2_Tag |
47 |
71 |
|
+ |
MM |
| x1090_y1303_r2_Tag_51 |
CTAGTTATGGCGTCGGATTAGACCG |
r2_Tag |
51 |
75 |
|
+ |
PM |
| x1091_y1303_r2_Tag_51 |
CTAGTTATGGCGACGGATTAGACCG |
r2_Tag |
51 |
75 |
|
+ |
MM |
| x1084_y1306_r2_Tag_65 |
AACTTGTCGTATGGGACTTTCAAGT |
r2_Tag |
65 |
89 |
|
+ |
PM |
| x1085_y1306_r2_Tag_65 |
AACTTGTCGTATCGGACTTTCAAGT |
r2_Tag |
65 |
89 |
|
+ |
MM |
Total number of rows: 6184720
Table truncated, full table size 540126 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GPL1980.bpmap.gz |
67.6 Mb |
(ftp)(http) |
BPMAP |
|
|
|
|
 |
Less...
More...