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Platform GPL16494 Query DataSets for GPL16494
Status Public on Feb 17, 2013
Title Agilent-028516 Custom human mapping supercoiling array (CN1)
Technology type in situ oligonucleotide
Distribution commercial
Organism Homo sapiens
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Mapping supercoiling

 
Submission date Jan 11, 2013
Last update date Feb 17, 2013
Contact name Nick Gilbert
E-mail(s) Nick.Gilbert@ed.ac.uk
Organization name The University of Edinburgh
Department Institute of Genetics and Molecular Medicine
Street address Crewe Rd South
City Edinburgh
ZIP/Postal code EH4 2XU
Country United Kingdom
 
Samples (28) GSM1062658, GSM1062659, GSM1062660, GSM1062661, GSM1062662, GSM1062663 
Series (2)
GSE43450 Transcription forms and remodels supercoiling domains unfolding large scale chromatin structures [Agilent ChIP-chip]
GSE43451 Transcription forms and remodels supercoiling domains unfolding large scale chromatin structures

Data table header descriptions
ID Agilent feature number
SEQUENCE
Chromosome
Chr_probe_start
Chr_probe_end
GB_RANGE RefSeq Acc[start..end] hg19
SystematicName

Data table
ID SEQUENCE Chromosome Chr_probe_start Chr_probe_end GB_RANGE SystematicName
CUST_12327_PI425266572 TTAATCAATGCAACACTAAGATACATGTGACTAATCAAGGAAAAAGAAAGAGTTTTGATT chr3 61003914 61003973 NC_000003.11[61003914..61003973] chr3:061003914-061003973
CUST_16971_PI425266526 TTCTGCTAGGAGGCCGTGGTGACGCAGAGGGCCTGCCCTGTGCCCCCGCTGATGGGAGCG chr11 1865954 1866013 NC_000011.9[1865954..1866013] chr11:001865954-001866013
CUST_3663_PI425266560 ACAAAAAGGAAATGAGTGAATTTGAGGCCCCATCTTGACAACCCCTGATAAAGACCAGAG chr11 131407136 131407195 NC_000011.9[131407136..131407195] chr11:131407136-131407195
CUST_15584_PI425266572 GTACTTTTACTTTTTATGAAAATGAGCTTTACTTTTACACATTCTTTGATTTGGGGAGTT chr3 61715262 61715321 NC_000003.11[61715262..61715321] chr3:061715262-061715321
CUST_11986_PI425266524 CTGAAGTGTGGGAATATGTATGGGGGGACTACTAAGTGTTCTGCTGGGTATACACAATGT chr11 18979540 18979599 NC_000011.9[18979540..18979599] chr11:018979540-018979599
CUST_24282_PI425266570 CATCATGGCCGCGTGTGAGTTTTCTCAGCTTCCTCAACCTAATCTACCTTCCTTACCGTT chr11 30346160 30346219 NC_000011.9[30346160..30346219] chr11:030346160-030346219
CUST_9007_PI425266570 TAATTTTGCCGTAGTTCAGATATACAACGGTAATTTTTATTGAATTTTAAGTTCTTTGAA chr11 28218692 28218751 NC_000011.9[28218692..28218751] chr11:028218692-028218751
CUST_9713_PI425266528 GTGAGATCACAATGCCCATCGGGATGGAACGCTGGGGATTCTGGGCTTCTTCTCCTGAAG chrX 70147817 70147876 NC_000023.10[70147817..70147876] chrX:070147817-070147876
CUST_7847_PI425266524 CCAATACTAACACTTTATTTGTGCCTGTAAGTCCAGTTAATTGGAGACTTGCTCTATCAG chr11 18348200 18348259 NC_000011.9[18348200..18348259] chr11:018348200-018348259
CUST_3001_PI425266570 AGACAGCGCCAGGCACTGCTGAGCTTGGAATTGCTTACTGAGCAACCAAGTTGTTTCAAA chr11 27472895 27472954 NC_000011.9[27472895..27472954] chr11:027472895-027472954
CUST_3325_PI425266526 CATTTTAAACTTAGTAAATTAAACCTCTTCACACATTTTACTCAATAAAATACATGTAAC chr11 464762 464821 NC_000011.9[464762..464821] chr11:000464762-000464821
CUST_28486_PI425266570 TTTCTTACTCCTTAGTCTTAGCTCTTTGGCTGTGGATAAAGATGGCTGGTAGGGATTGGC chr11 30795848 30795907 NC_000011.9[30795848..30795907] chr11:030795848-030795907
CUST_6768_PI425266524 ATTATCACTGTGATCATGAAAACATACCAAAAAAAGGGCTGTGACTGCCCGGGCGCTGAC chr11 18210415 18210474 NC_000011.9[18210415..18210474] chr11:018210415-018210474
CUST_6175_PI425266528 AAAAACAAAACCAAAAACCACACACACACAACCACGTTTGCTTTAATGGGCATAAAGTTA chrX 69452164 69452223 NC_000023.10[69452164..69452223] chrX:069452164-069452223
CUST_10831_PI425266524 CTGGGGGTGGAGGAGTTTTGTCTCTGCCAGATAATTAAGTTCAGAATGCTAACAAGCTTT chr11 18774065 18774124 NC_000011.9[18774065..18774124] chr11:018774065-018774124
CUST_4_PI425266564 TGGTAGTGGTGATAGTTGAGCAAGGTATATGGTGGGCCCCATTTAGAGTTATAGGGTGGG chrX 119145181 119145240 NC_000023.10[119145181..119145240] chrX:119145181-119145240
CUST_17650_PI425266570 TTGCATAAAGGCTGGAGAGAAAAAAGTTTCCATCTCTGCATCACAACTTCCAGGCTTTTG chr11 29399611 29399670 NC_000011.9[29399611..29399670] chr11:029399611-029399670
CUST_18254_PI425266572 CAAAAGTACCCTTGTCGCAGTGAGGTGTGTAGTCGAGATGTAATGTAATGATTTGCAAAG chr3 62118964 62119023 NC_000003.11[62118964..62119023] chr3:062118964-062119023
CUST_11346_PI425266576 AAGAGAAAACTTTCAACTTTTAATAGTATTTCAAATTTACCTGAAAGTGACCCAAATAAT chr16 78971105 78971164 NC_000016.9[78971105..78971164] chr16:078971105-078971164
CUST_18550_PI425266526 CCTCTTGCCAGCCTCTGCTGCTCCGCGTGTGGTAGGAGCTACCAGTCTGGGGTCCGGGCT chr11 1997092 1997151 NC_000011.9[1997092..1997151] chr11:001997092-001997151

Total number of rows: 173214

Table truncated, full table size 27895 Kbytes.




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