NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Platform GPL14788 Query DataSets for GPL14788
Status Public on Nov 17, 2011
Title Human DNA Methylation 4x72K ENCODE HG17 Targeted Tiling Array
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Homo sapiens
Manufacturer NimbleGen
Manufacture protocol see manufacturer's web site www.nimblegen.com
 
Description Human genome build hg17
Tiles all biologically significant ENCODE regions
2007-04-30_HG17_encode_4plex.ndf
2007-04-30_HG17_encode_4plex.pos
 
Submission date Oct 25, 2011
Last update date Nov 19, 2011
Contact name Colm E Nestor
Organization name Univeristy of Edinburgh
Department MRC Human Genetics Unit
Street address Western General Hospital, Crewe Road
City Edinburgh
ZIP/Postal code EH4 2XU
Country United Kingdom
 
Samples (14) GSM822420, GSM822421, GSM822422, GSM822423, GSM822424, GSM822425 
Series (1)
GSE33219 Hydroxymethyl DNA-IP of genomic DNA for many different normal human tissues

Data table header descriptions
ID
SEQUENCE Sequence of oligo
Chromosome Chromosomal location
RANGE_GB GenBank accession number
RANGE_START Chromosomal start position of oligo
LENGTH Oligo length
RANGE_END Chromosomal end position of oligo

Data table
ID SEQUENCE Chromosome RANGE_GB RANGE_START LENGTH RANGE_END
CHR05FS131285434 GAAAACTGTGGTGCCTTCTCTATCGCTACTGCTTTACTGGTATCCA chr5 NC_000005.8 131285434 46 131285479
CHR05FS131285514 CAAGTTGGGACACTCCCAGTCTAAAACAGCAGAGAAGAAATAGTGTAAGACTTTGAA chr5 NC_000005.8 131285514 57 131285570
CHR05FS131285734 GCCTTCCTCTCTAGACTTTTCTACCATGCGGATTATTGATCTAAGAGACAG chr5 NC_000005.8 131285734 51 131285784
CHR05FS131286131 GACTTCAGCATCCACAGATTTTGGTATCCAAGGGAGGTCTTGGAA chr5 NC_000005.8 131286131 45 131286175
CHR05FS131286237 TAAGCTTTCTAGTGACTTCCCACTATGGAATAAGGCTATTACCTGTATATTCGCCCAT chr5 NC_000005.8 131286237 58 131286294
CHR05FS131286832 CCATTCCATTTATTCCACTCCCAGGTGTTTTAGAATTTCTAATGCTGTGCCTTG chr5 NC_000005.8 131286832 54 131286885
CHR05FS131287927 ATTCACACAGGGATTGATGGACCACATGGTCATTCTGTCTTTAATTTTTAGAGACACCT chr5 NC_000005.8 131287927 59 131287985
CHR05FS131288432 TCGTTACTGCTCTTGTTGCCTATACTTTTGGTAGCATATCCACGAAATCACTGCTAA chr5 NC_000005.8 131288432 57 131288488
CHR05FS131289935 GATTTTTGTATTTGGAACCATCCTTGCATTCCAGAGATAAACGCCACCTGGT chr5 NC_000005.8 131289935 52 131289986
CHR05FS131291036 TCAGGTAGAATGTTTTGTATACATGTTAGGTCCATGTTGTCTATAGCGCTGTTCAAGTCT chr5 NC_000005.8 131291036 60 131291095
CHR05FS131291422 TTTAGTGTATGTATCCTTAAATCTAAAGAGGATCGGCCGGGCGCG chr5 NC_000005.8 131291422 45 131291466
CHR05FS131292618 GGGAAACTCCTTGTCTCTCCATTTTTGAAAGACAGTTTTCCTGGGTGTACT chr5 NC_000005.8 131292618 51 131292668
CHR05FS131292837 TGACAACTCATTTATACTGTTTCTCAGTGTGGATTTCTTGGCTTCCTTCTACTTGGGT chr5 NC_000005.8 131292837 58 131292894
CHR05FS131293232 TGAGCATAGTATCCAATGGGTAGCTTTTCAATCTTCACCCTCTTCCCA chr5 NC_000005.8 131293232 48 131293279
CHR05FS131293537 AGGTTGATTCCACGTCTCTGCTATTGTGAAAATAGCTGCAACAAACATATGTGTTCATGT chr5 NC_000005.8 131293537 60 131293596
CHR05FS131294624 CCTTGACAATTTTACTTGTATCAGCATCTACGCATTAGAAAATAACAGCCACTTCTCCCA chr5 NC_000005.8 131294624 60 131294683
CHR05FS131294734 TCAAATCTTTGTGCTAGTCCAAACCACCGTCTTTGTTGTTATCAGCCTCCA chr5 NC_000005.8 131294734 51 131294784
CHR05FS131294816 TTGTAAGACAGGTGTGACAGAAGGTAGTCCCAAGAACATCCCTTGAAAAGTT chr5 NC_000005.8 131294816 52 131294867
CHR05FS131294936 ACTCACTCTGCACTGAGCTAGGTGGAGAGCCTATGGCAAATGTTT chr5 NC_000005.8 131294936 45 131294980
CHR05FS131295016 AGTCACCAATCACCTTGGGTATGTTGGGTCCTATCAGCACTCTGA chr5 NC_000005.8 131295016 45 131295060

Total number of rows: 71566

Table truncated, full table size 7439 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL14788_2007-04-30_HG17_encode_4plex.ndf.gz 3.9 Mb (ftp)(http) NDF
GPL14788_2007-04-30_HG17_encode_4plex.pos.gz 720.9 Kb (ftp)(http) POS

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap