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| Status |
Public on Oct 01, 2010 |
| Title |
Francisella tularensis full genome qRT-PCR |
| Technology type |
RT-PCR |
| Distribution |
virtual |
| Organism |
Francisella tularensis |
| |
|
| Description |
Francisella tularensis full genome qRT-PCR
|
| |
|
| Contributor(s) |
Jones M, Sun Q, Dracheva T |
| Submission date |
Sep 24, 2010 |
| Last update date |
Oct 01, 2010 |
| Contact name |
John Braisted |
| E-mail(s) |
jbraisted@jcvi.org
|
| Organization name |
J Craig Venter Institute
|
| Department |
PFGRC
|
| Lab |
PFGRC_EXTSW
|
| Street address |
9704 Medical Center Dr
|
| City |
Rockville |
| State/province |
MD |
| ZIP/Postal code |
20850 |
| Country |
USA |
| |
|
| Samples (33)
|
GSM627780, GSM628527, GSM628528, GSM628529, GSM628726, GSM629014
GSM629016, GSM629018, GSM629020, GSM629021, GSM629023, GSM629024, GSM629025, GSM629026, GSM629027, GSM629270, GSM629271, GSM629272, GSM629273, GSM629274, GSM629275, GSM629277, GSM629278, GSM629279, GSM629282, GSM737577, GSM737578, GSM737579, GSM737581, GSM737582, GSM737583, GSM737584, GSM737585
|
| Series (2) |
| GSE25603 |
Transcriptional profiling of intracellular F. tularensis Type A and Type B strains following infection of human monocyte derived macrophage (hMDM). |
| GSE29755 |
qRT-PCR on Francisella tularensis LVS and ShuS4 strain during macrophage infection |
|
| Data table header descriptions |
| ID |
|
| FTT_LOCUS |
LOCUS ID in Francisella tularensis subsp. tularensis SCHU S4 |
| FTL_LOCUS |
LOCUS ID in Francisella tularensis subsp. tularensis LVS |
| COMMON_NAME |
Gene common name |
| GENE_SYMBOL |
Gene Symbol |
| FORWARD |
qRT-PCR Forward primer |
| REVERSE |
qRT-PCR Reverse primer |
| ORF_LIST |
Locus tag |
| Data table |
| ID |
FTT_LOCUS |
FTL_LOCUS |
COMMON_NAME |
GENE_SYMBOL |
FORWARD |
REVERSE |
ORF_LIST |
| 1 |
FTT0001 |
FTL_0001 |
chromosomal replication initiator protein dnaA |
dnaA |
TCAACAATCCAAGAGTGTCATGG |
TGTGGTCCAGCTGTGATAACCT |
FTT_0001, FTL_0001 |
| 2 |
FTT0002 |
FTL_0002 |
DNA polymerase III, beta chain |
dnaN |
AGTTGCAAATAGTAAGAGTACAATGCCT |
TCTCTGTATCAAGATCCGAAGCC |
FTT_0002, FTL_0002 |
| 3 |
FTT1744c |
FTL_0006 |
indolepyruvate decarboxylase |
|
GGAGATGGCGCAGTAGGAAAG |
GAAACACAAGCCGCTGAAGC |
FTT_1744c, FTL_0006 |
| 4 |
FTT1746 |
FTL_0008 |
Peptidase |
|
TATATCGCTGCTGGTGCAAAA |
TCCATAAGCCCTGTAAAACCAAA |
FTT_1746, FTL_0008 |
| 5 |
FTT1747 |
FTL_0009 |
outer membrane protein |
|
AAGCAACAAGCTCAAGCAGATCT |
TTGAACGCATCAGCATCGTC |
FTT_1747, FTL_0009 |
| 6 |
FTT1748 |
FTL_0010 |
thiosulfate sulfurtransferase |
|
ATAATGCTGAAAAAGCTATGCAACA |
TGGGTAACTAGCCTGTAGCCATG |
FTT_1748, FTL_0010 |
| 7 |
FTT1749 |
FTL_0011 |
preprotein translocase subunit SecB |
secB2 |
CAGGCTGGCATTTTTACAGTTG |
GCCTCACGTGCATAATGGTAAAG |
FTT_1749, FTL_0011 |
| 8 |
FTT1750 |
FTL_0012 |
Recombinase A protein |
recA |
AAGGCGGTACTGCAGCATTT |
CGGCTGTGACACGATCAGATT |
FTT_1750, FTL_0012 |
| 9 |
FTT1753 |
FTL_0015 |
propionate kinase |
ackA |
GCATTTCATCAGACTGTGCCA |
GAAGTTCCATGTGCGCCATAT |
FTT_1753, FTL_0015 |
| 10 |
FTT1754 |
FTL_0016 |
phosphate acetyltransferase |
pta |
TGGTGACTGTGCTGTAAATCAGG |
CACGCGGCTCAATACCAAAT |
FTT_1754, FTL_0016 |
| 11 |
FTT0007 |
FTL_0020 |
aspartyl-tRNA synthetase |
aspS |
ATTACGCGTTCAAAGGCGAT |
CCCTCTGGTGTTGCTTTTGTTAA |
FTT_0007, FTL_0020 |
| 12 |
FTT0006 |
FTL_0021 |
Proline/betaine transporter, major facilitator superfamily (MFS) transport protein |
|
GCGTTGCGTTTTAACTGCTG |
TAACCTTATCAAAACCCAAGCCC |
FTT_0006, FTL_0021 |
| 13 |
FTT1668 |
FTL_0024 |
serine transporter |
|
TGCCGACAAAAAAGCCTCTAA |
TTGGAGAGAGGGTAAGCATTGAG |
FTT_1668, FTL_0024 |
| 14 |
FTT1667 |
FTL_0025 |
hypothetical protein FTL_0025 |
|
GCTCTCTCATCAAAATTAAATTTCAAAA |
TGTAGAATTAAATTCCATAGAAAAAGCATAA |
FTT_1667, FTL_0025 |
| 15 |
FTT1666c |
FTL_0027 |
3-hydroxyisobutyrate dehydrogenase |
|
AATGCTTTTTACTCAGTGGTTTAGTTATTG |
CACTTTGTGACATTGCTTTAAAAAAATC |
FTT_1666c, FTL_0027 |
| 16 |
FTT1665 |
FTL_0028 |
aspartate carbamoyltransferase |
pyrB |
GATGCGTCACCCTAAACCACA |
ACTGAGTGGGATGTTCATTTTCAC |
FTT_1665, FTL_0028 |
| 17 |
FTT1664 |
FTL_0029 |
carbamoyl phosphate synthase large subunit |
carB |
GACTGGTGGTTCAAATGTGCA |
ATGCCAATGCCGAAGAGC |
FTT_1664, FTL_0029 |
| 18 |
FTT1661 |
FTL_0032 |
thiopurine S-methyltransferase |
|
GTAGGTTTTTGTCAAGAATCACCAAA |
CAGCCACACATTGGTATTAAGCAT |
FTT_1661, FTL_0032 |
| 19 |
FTT1660c |
FTL_0033 |
dihydroorotase |
|
CGCCAATGATTACAGAGCTTGA |
AAAACATGCTTCCCTCGAGC |
FTT_1660c, FTL_0033 |
| 20 |
FTT1659 |
FTL_0034 |
hypothetical protein FTL_0034 |
|
AGATCAAAAGCCAGGTAGAGGAAC |
CATCTGCTTCAGCGAACTCATC |
FTT_1659, FTL_0034 |
Total number of rows: 1068
Table truncated, full table size 126 Kbytes.
| Supplementary data files not provided |
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