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Status
Public on Apr 01, 2011
Title
Agilent-020954 Clostridium difficile Expression 15.7k array
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Clostridioides difficile Manufacturer
Agilent Technologies
Manufacture protocol
see manufacturer's web site at http://www.agilent.com/
Description
Agilent-020954 CD_Expression-01_1_Of_1
Submission date
Jun 17, 2010
Last update date
Jan 17, 2012
Contact name
Monot Marc
E-mail(s)
mmonot@pasteur.fr Phone
+33145688390
Organization name
Institut Pasteur
Department
Genomes and Genetics
Lab
Biomics
Street address
25, rue du docteur roux
City
Paris
ZIP/Postal code
75015
Country
France
Samples (74)
GSM557406 , GSM557407 , GSM557408 , GSM557409 , GSM557410 , GSM557411
GSM557412 ,
GSM557413 ,
GSM625914 ,
GSM625915 ,
GSM625916 ,
GSM625917 ,
GSM625918 ,
GSM625919 ,
GSM625920 ,
GSM625921 ,
GSM723740 ,
GSM723741 ,
GSM723742 ,
GSM723743 ,
GSM861695 ,
GSM861696 ,
GSM861697 ,
GSM861698 ,
GSM861699 ,
GSM861700 ,
GSM861701 ,
GSM861702 ,
GSM861703 ,
GSM861704 ,
GSM861705 ,
GSM861706 ,
GSM861707 ,
GSM861708 ,
GSM861709 ,
GSM861710 ,
GSM1040653 ,
GSM1040654 ,
GSM1040666 ,
GSM1040667 ,
GSM1058171 ,
GSM1058172 ,
GSM1058173 ,
GSM1058174 ,
GSM1058175 ,
GSM1058176 ,
GSM1058177 ,
GSM1058178 ,
GSM1058179 ,
GSM1058180 ,
GSM1058181 ,
GSM1058182 ,
GSM1058183 ,
GSM1058184 ,
GSM1058185 ,
GSM1058186 ,
GSM1111964 ,
GSM1111965 ,
GSM1194911 ,
GSM1194912 ,
GSM1194913 ,
GSM1194914 ,
GSM2290114 ,
GSM2290115 ,
GSM2290116 ,
GSM2290117 ,
GSM2696945 ,
GSM2696946 ,
GSM2696947 ,
GSM2696948 ,
GSM4494872 ,
GSM4494873 ,
GSM4494874 ,
GSM4494875 Series (24)
GSE22423 Clostridium difficile CD630E: growth with 10 mM cysteine in PY vs growth in PY
GSE25474 Comparison of the expression profiles of 630E strain after 4h and 10h of growth
GSE25475 Comparison of the expression profiles of 630E strain and a sigH mutant after 10h of growth
GSE25521 Effect of sigH in the growth phase transition of Clostridium difficile
GSE29275 Comparison of the expression profiles of 630E strain and a sigD mutant after 6h of growth.
GSE35070 Comparison of the expression profiles of 630E JIR8094 strain and a ccpA mutant after 10h of growth in TY with 0.5% glucose.
GSE35071 Comparison of the expression profiles of 630E JIR8094 strain and a ccpA mutant after 10h of growth in TY.
GSE35072 Clostridium difficile CD630E JIR8094: growth 10h with 0.5% glucose in TY vs growth 10h in TY
GSE35073 Clostridium difficile mutant ccpA CD630E JIR8094: growth 10h with 0.5% glucose in TY vs growth 10h in TY
GSE35152 Comparison of the expression profiles of 630E JIR8094 strain and a ccpA mutant
GSE42469 Clostridium difficile C630E: growth in TY with 30 mM proline vs. growth in TY alone
GSE42471 Comparison of the expression profiles of the 630E (JIR8094) strain and a prdR mutant (LB-CD8) after 4h growth in TY supplemented with L-proline
GSE42472 Comparison of the expression profiles of the 630E JIR8094 strain and a prdR mutant in the presence of proline in TY
GSE43198 Comparison of the expression profiles of the 630E strain and a sigE mutant after 14h of growth
GSE43199 Comparison of the expression profiles of the 630E strain and a sigF mutant after 14h of growth
GSE43200 Comparison of the expression profiles of the 630E strain and a sigG mutant after 19h of growth
GSE43201 Comparison of the expression profiles of the 630E strain and a sigK mutant after 24h of growth
GSE43202 Comparison of the expression profiles of the 630E JIR8094 strain and sporulation sigma factor mutants (sigE, sigF, sigG, sigK, spoIIID) in MS
GSE45689 Comparison of the expression profiles of the Clostridium difficile 630E strain and a spoIIID mutant after 15h of growth
GSE49168 Comparison of the expression profiles of 630E strain and a hfQ mutant after 7.5h of growth in Tyt
GSE55274 Comparison of the expression profiles of 630E strain and hfQ mutants
GSE85980 Genome-wide comparison of gene expression between biofilm and planktonic growth
GSE100946 Global transcriptional control by the transcriptional regulator SinR in Clostridium difficile
GSE149245 Comparison of the expression profiles of 630E strain and a sig54 mutant after 6h of growth
Data table header descriptions ID Agilent feature number
COL Column
ROW Row
NAME NAME
Probe_ID Spot identifier
CONTROL_TYPE Control type
CHROMOSOMAL_LOCATION Chromosomal Location
SEQUENCE Sequence
ORF Locus tag
SPOT_ID control
Data table ID COL ROW NAME Probe_ID CONTROL_TYPE CHROMOSOMAL_LOCATION SEQUENCE ORF SPOT_ID 1
96
164
GE_BrightCorner
GE_BrightCorner
pos
CONTROL
2
96
162
DarkCorner
DarkCorner
pos
CONTROL
3
96
160
DarkCorner
DarkCorner
pos
CONTROL
4
96
158
CD1814_3334
CD1814_3334
FALSE
unmapped
TAAGCAAGATAATACTGCTTTAAATATAGTAGAATTTAAAGATTATGGGCCTGTTATAGT
CD1814 5
96
156
NA
NA
ignore
NA
6
96
154
CD0592_1090
CD0592_1090
FALSE
unmapped
GGTAAACGTTGTACAAGATACTCTTAAATGCGAACAAGAAGTTCTTAAAACTGAAACTAT
CD0592 7
96
152
CD0592_1089
CD0592_1089
FALSE
unmapped
TAGAAGATACTAATTCTAATAGCATTAAATGTGAAGAAATCAAAGATAACGTAATTGAAG
CD0592 8
96
150
CD1180_2104
CD1180_2104
FALSE
unmapped
GAGTAAATGTAATGCTTATGTCGCCATTTGTTGATGATATAATTGATTTGATTATAGAAG
CD1180 9
96
148
CD1437_2604
CD1437_2604
FALSE
unmapped
GTTTTAAAAGATGGAAAATCCTATGTTATAAATAAAGAAATAGAAGAGAACTGTAATAAA
CD1437 10
96
146
CD0104_202
CD0104_202
FALSE
unmapped
TTTAGCAACAGAAATTGCGACAGTATTGAGAGGTAAACATAAACCAACATTTACTCCTCA
CD0104 11
96
144
CD2627_4860
CD2627_4860
FALSE
unmapped
TAGTGGCAGGAATTAGTGATGAATTATACAAGCAAAATATCAACATAGTAGATATATCAC
CD2627 12
96
142
CD1480_7032
CD1480_7032
FALSE
unmapped
AATGGCACTAGCTGTAATGTATATGGTTAAAAATTCAAAAAAGAA
CD1480 13
96
140
CD0365_695
CD0365_695
FALSE
unmapped
AAATATCTACTATGCTACCGCAAAATAGCCAGTATTTATATATTTGCATTGCTTCAATAC
CD0365 14
96
138
CD2476_4574
CD2476_4574
FALSE
unmapped
CTTTTATGATGGGAAGAGTTATAAATGTAAAGAAGTTTATTGAAGATATAGATATTGAGA
CD2476 15
96
136
CD1753_3215
CD1753_3215
FALSE
unmapped
TCAAAAGGTATGAAATCTCGATTAAATTTTATAAAAGCTTTATTACATAATCCAGATATT
CD1753 16
96
134
CD1378A_2486
CD1378A_2486
FALSE
unmapped
TAGCGAAGAAAATAGGTGTTAATGAAAACTATTTGTCAGCTATTTTAAATGGAAGAAGAA
CD1378A 17
96
132
CD0145_279
CD0145_279
FALSE
unmapped
TTGAGATAATTGGATATTCTTTAGATGATGTAAAGAATAAGAATATAGGTGAAATAGATG
CD0145 18
96
130
CD2024_3711
CD2024_3711
FALSE
unmapped
TATCTTATCTTCACATATTACAAGTGATTTAGATAAGATAGCAGACTATATTACATTTAT
CD2024 19
96
128
CD2752_5109
CD2752_5109
FALSE
unmapped
GTTTCCAGAAACAATGCTATTAAAGAATTATTTACTAATAAAGCAGGAAATCTTAACTAA
CD2752 20
96
126
CD1792_3293
CD1792_3293
FALSE
unmapped
AAGTTTCTGGAGAATTACTATGTGATTATTATCACTCAAAATTTGGAGTAGACACTAGAG
CD1792
15744 1708 Kbytes .Supplementary data files not provided
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