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Entrez Protein Clusters
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Concise BLAST
search clusters sliced at genera with BLAST

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search against PSSMs with RPS-BLAST

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browse microbial resources at NCBI

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browse complete plasmids at NCBI

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browse organelle genome resources

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examine genome neighborhoods

Related Resources
ACLAME
A CLAssification of genetic Mobile Elements

HAMAP
High-quality Automated and Manual Annotation of microbial Proteomes

KEGG Orthology
Kyoto Encyclopedia of Genes and Genomes Orthologs

InterPro
EMBL-EBI Database of Protein Families

TIGR CMR
TIGR Comprehensive Microbial Resource

Protein Clusters statistics

 prokaryotic  chloroplast  mitochondrial  virus  protist  plant  total 
Number of contributing nucleotide sequences:3511 182 2052 1083 13363 15406 35597
Total proteins:3867977 16678 26612 73936 249482 372970 4607655
Number of nucleotides with protein cluster members:3462 182 1907 1030 9331 7923 23835
Number of clusters:492189 643 213 12275 52647 69790 627757
Proteins in clusters:3197177 14800 19724 53005 174010 262891 3721607
Number of uncurated clusters:484406 465 17 11264 52178 68542 616872
Number of proteins in uncurated clusters:2468952 1383 41 44901 167062 245420 2927759
Curated clusters:7783 178 196 1011 469 1248 10885
Curated proteins:728225 13417 19683 8104 6948 17471 793848
Unique curated cluster names:3955 177 14 402 434 969 5622
'hypothetical protein' curated clusters:681 0 0 421 9 11 1122
Curated Cluster PubmedIds:7043 44 1 1794 1663 325 10870
Cluster PubmedIds:73426 3822 784 18236 26192 33029 89263


STATISTICS FOR PROTEIN CLUSTERS RELEASE Dec 02 2010


NOTE - links in the table generate Entrez search results where the number of entries may differ from those generated at release time.