NC_001351 AF416556
  1 CTGGGGAATTCTCGAGTTGCCGCATGGGCAAGCAAAGAAAAAACAAGGCA 50
    ||||||||||||||||||||||||||||||||||||||||||*|||||||
  1 CTGGGGAATTCTCGAGTTGCCGCATGGGCAAGCAAAGAAAAA-CAAGGCA 49

 51 GGGAGGAGACTTACCTGAGAAAGGAGCCCCGGGGCAACTCTTCTCAGAAT 100
    ||||||||||||||||||||||||||||||||||||||||||||||||||
 50 GGGAGGAGACTTACCTGAGAAAGGAGCCCCGGGGCAACTCTTCTCAGAAT 99

101 CCAGCGAGAGGCGTAGGAGAGAGGGCCGCGGTGCTCTGGAGTAGAGGCTT 150
    ||||||||||||||||||||||||||||||||||||||||||||||||||
100 CCAGCGAGAGGCGTAGGAGAGAGGGCCGCGGTGCTCTGGAGTAGAGGCTT 149

151 CTTGCTTCGAAACACCATCGATCGTCCCTTCTTCTTTTACCTTCTCCTGG 200
    ||||||||||||||||||||||||||||||||||||||||||||||||||
150 CTTGCTTCGAAACACCATCGATCGTCCCTTCTTCTTTTACCTTCTCCTGG 199

201 CTCTTCCGATGAGACGCGACCGGTGGCATCACCTCTCGGTTCGTCTTCCA 250
    ||||||***|||||||||||||||||||||||||||||||||||||||||
200 CTCTTCGAGTGAGACGCGACCGGTGGCATCACCTCTCGGTTCGTCTTCCA 249

251 ACCTGCTTTTTGTCTATCTAAGCCTCTGCCGCGGATCCTCTCTTGAGCCC 300
    |||||||||||||||||||*||||||||||||||||||||||||||||||
250 ACCTGCTTTTTGTCTATCTGAGCCTCTGCCGCGGATCCTCTCTTGAGCCC 299

301 CT 302
    ||
300 CT 301