NC_005078 AY571959 1 CGCACATGTGATCCTAGGCGATTCTTGATCGCGCTTATTAGCTAACCAAT 50 ******|*|**|*||**||**|**||*|***|**||**|*||*|**||*| 1 ------TCTTCTACTGAGCTTTAATTCAAATCCTTTGGTTGCAAGTCATT 44 51 TTAATTTGGTGTTGAAGTGTTGACACGCTCTCTAACACATGGGGCAGCTT 100 *|***|***|****|||*****||*|***||*||******||*|*|**** 45 ATGGCTCACTCC--AAGGAAATACCCAG-CTTTA------GGTGGACTCA 85 101 ATCAGCTTCTTTCAGGAGATTCCTGTTTTTCTACAGGAAG-CTCTGAACA 149 ||||*******|*||*|||***|||**|***|*||***|**||*||||*| 86 ATCAC------TGAGAAGAGGTCTGAGTCAATTCACTCACACTGTGAAAA 129 150 TCGCTTTAGTG---GCTGTTAGTCTCATAGCTGTCATCAAAGGCATCATT 196 **|*|*|**||***|*||**|**||*|||||||*||*||**|*|*|||** 130 CAGATGTGTTGAAAGATGCCAAGCTTATAGCTGACAGCATTGACTTCAAC 179 197 AACCTTTACAAAAGTGGTCTCTTCCAGTTCATCTTCTTTCTCCTCCT-AG 245 *|**|||*|**||||*****|*****|**|*||********|******|| 180 CAGGTTT-CGCAAGT-----CCAAAGGGCCCTCAGAAAAAACAAAAGGAG 223 246 CAGGGAGGTCCTGCTCGGATGGCACATTCAAAATAGGCCTACACACTGAG 295 ***|||||**|||**|*||**|*****||*|||*|*******|*||*|*| 224 TGAGGAGGATCTGAACAGACTGAGGGATCTAAACAAAGAGGTAGACAG-G 272 296 TTCCAGTCAGTCACCCTTACCATGCAGAGACTTTTAGCTAACCATTCAAA 345 ||***|||**|*|*****|*|**|*|||**|***||***||******|*| 273 TTAATGTCTATGAAAAGCATCCAGAAGAACCCCATATTCAAG-----ATA 317 346 TGAGCTCCCATCTCTCTGCATGCTTAACAATAGTTTTTATTATATGAGGG 395 *|||*||***|******|*|||*********||*||***|*|*|***||* 318 GGAGATC---TGGGAAGGGATGAACTGATGGAGCTTGCGTCAGACTTGGA 364 396 GAGGTGTGAACACCT--TCCTGATTCGTGTTTCTGATATTTCAGTCCTCA 443 *|******||*|*****|***||****||**||*|***|*|||****|*| 365 AAAACTAAAAAATAAAATAAAGAGGACTGAGTCAGGC-TCTCAAGGGTTA 413 444 TGAAGGAGTATGATGTATCAAT--CTATGAACCAGAAGACCTTGGAAATT 491 |**|*|*|*|***|||**||*|**|*||*|||*|*||||*|***|||||| 414 TACATGGGCAATTTGTCACAGTTGCAATTAACAAAAAGATCA--GAAATT 461 492 GTCTTAACAAGTCTGACTCAAGCTGG-GCTATTCATTGGTTCTCAAATGC 540 *|****||***|**||*||*|*|****|**|**|**|||*****|||||* 462 TTGAAGACTT-TAGGATTCCAACAACAGAGAGGCCCTGG-----AAATGG 505 541 TTTGGGACATGACTGGCTTATGGATCCTCCAATGCTATGTAGAAACAAGA 590 |*|*|*******||||******|||**|*||***|*||**|**|||*|*| 506 TGTAGTTAGAATCTGG------GATGTTTCAGATCCATCAA--AACTAAA 547 591 CAAAGAAGGAGGGATCTAA-CATTCAATTCAACATCAGCAAAGCTGATGA 639 *||**|*|***||*||||**|***|**||**|||***||*****|||*** 548 TAATCA-GTTTGGTTCTATGCCAGCTCTT--ACAATTGCTTGTATGACTG 594 640 TGCCAGAGTGTATGGAAAGAAGATAAGAAATGGTATGAGGCATCTCTTCA 689 |*||||*|||*|*|*||*||*||**||***||||***||***|**||||* 595 T-CCAGGGTGGA-GAAACGATGAACAGCG-TGGTCCAAGCACTAACTTCT 641 690 GGGGCTTCCATGACCCGTGTGAGGAAGGGAAAGTGTGCTACCTGACCAT- 738 **||*||***||**|**|||*|*|*|***|||*|****||**|||||*|* 642 CTGGGTTTATTGTACACTGTCAAGTATCCAAATT----TAAATGACCTTG 687 739 -CAATCAGTGTGGTGACCCCAGTTCCTT--------TGACTACTGTGGCG 779 *|||*|*|**|***||*|*|***|*|||********||||||**|**|*| 688 ACAAGCTGACTTTAGAGCACGAATGCTTACAAATTGTGACTAAGGACGAG 737 780 TGAATCATC----TTTCCAAATGTCAGTTTGACCA---------TGTGAA 816 *|***||||****|*||****|*|*|*|||**||**********|||||| 738 AGCTCCATCAACATCTCTGGCTATAACTTTAGCCTGTCAGCTGCTGTGAA 787 817 CACCCTTCATT---TCCTTGTGAGAAGTAAGACACATCTCAACTTTGAGA 863 **|***|**||***|*||||***|**|*||*|**|*|***|||**|*||* 788 GGCTGGTGCTTCAATACTTGACGGTGGCAACATGC-TGGAAACAATCAGG 836 864 GGTCTTTGAAAGCATTTTTCTCATGGTCTCTGACAGACTCCTCAGGAAAG 913 |****|****|**||||*|||**|*****||||***|*||**|***|*|| 837 GTCACTCCTGATAATTTCTCTAGT-----CTGATTAAGTCAACTCTACAG 881 914 GACATGCCAGGAG-GTTATTGTCTAGAGGAATGGATGTTGATAGCAGCCA 962 |*||**|*|*|||*|**|*|||*||*||**|||******||*|*|*|**| 882 GTCAAACGAAGAGAGGGAATGTTTATAG--ATGA-----GAAACCTGG-A 923 963 AAATGAAATGTTTCGGAAACACTGCTGTTGCTAAATGTAATCAAAATCAT 1012 ||**|||||**||**||||**||**|||***|||||*****|*******| 924 AACCGAAATCCTTATGAAAACCTTTTGTA--TAAATTGTGCCTCTCAGGT 971 1013 GACTCAGAGTTCTGTGATATGCTGAGGCTATTCGACTATAACAAGAATGC 1062 ||*|**|*|**||***||**|*|*|*|*|*****|*|*|***||||***| 972 GA-TGGGTGGCCTTACATTGGTTCAAGATCACAAATTCTTGGAAGAT--C 1018 1063 AATAAAGACCCTCAATGATGAATCAAAGAAAGAAATCAATCTTCTAAGCC 1112 *****|*|*|***|*||*|||*||*||*|||||||*|*****|*****|* 1019 TTGGGACAACACAAGTGTTGA-TCTAACAAAGAAACCTCAAGTTGGGCCA 1067 1113 AGACAGTGAATGCCTTAATCTCAGATAATTTGTTAATGAAGAATAAAATT 1162 ||||||*****|****|***|||||**||*|***|*||***||***||*| 1068 AGACAGCCCGAGAAAAATGGTCAGA--ATCTAAGACTGGCAAACCTAACT 1115 1163 AAAGAGCTAATGAGCATCCCTTATTGTAATTACACAAAGTTTTGGTATGT 1212 *||**||*|***||||****|*|**|**|***|**||||***|***||** 1116 GAAATGC-AGGAAGCAGTGATAAAAG--AGGCCGTAAAGAAGTTAGATCC 1162 1213 CAATCATACCCTGA--CAGGGCAGCACACT-CTTCCAAGATGTTGGTTGA 1259 ||*|*||||*|||***|**|*||*|**|***|**||||*|*****|*|** 1163 CACTAATACACTGTGGCTTGACATCGAAGGACCCCCAACA-----GATCC 1207 1260 TAAGGAATGGAAGTTATCTTAACACTTCTGAATTCAGGAATGACTGGATT 1309 |**|||||*|**|||*|*|*|||****|***|**||**|****|****|| 1208 TGTGGAATTGGCGTTGTATCAACCAGCCAACAAACATTACATTCACTGTT 1257 1310 TTAGAGAG-----TGATCACCTCATCTCAGAGATGTTAAGTAAGGAATAT 1354 |||||*||*****||||*|******||***|||*****||||***|*|** 1258 TTAGAAAGCCACATGATGAGAAGGGCTTCAAGAACGGTAGTAGACATTCA 1307 1355 GCTGAAAGGC-AAGGCAAAACCCCAATCAC--ATTAGTTGATATTTGTTT 1401 **||**|**|*||*|*|**||****|**||**|*|****|*|*||***** 1308 CATGGCATTCTAATGAAGGACATAGAGGACGCAATGCCAGGTGTTCTAAG 1357 1402 CTGGAGCACAATTTTCTTCACAGCAT-CATTGTTCCTTCATCTAGTCGGA 1450 ||*****|*|**|||*||**||**|**|||*||***|*||*||****|** 1358 CTATGTTATAGGTTTATTACCACAAGACATGGTGATTACAACTCAAGGTT 1407 1451 ATACCCACCCATCGACACCTCAAAGGCGAAGCCTGTCCTTTGCCTCATAA 1500 *|**|*||**|**||*||*|****||**|**|*||**|*******|*|*| 1408 CTGACGACATAAGGAAACTTTT--GGATATTCATGGACGGAAGGACTTGA 1455 1501 GCTGGACAGCTTCGGAGGTTGTA---GATGTGGCAAATATCCCAGATT-G 1546 **|*|***|*|**|*||*|***|***|||**|||||***||***|||**| 1456 AGTTGGTGGATGTGAAGCTCACATCCGATCAGGCAAGACTCTATGATCAG 1505 1547 AAGAAACCCACCATCT---GGCACAAAAGACATTAAACA-CAGCCAAGAC 1592 *|||********|**|***|||||****|****||||||*||*****||* 1506 CAGATTTGGGAGAAGTTTGGGCACCTTTG----TAAACATCATAATGGAG 1551 1593 CCCTGCCGACCCGGGCCCAGCCCGGGTCGGCGGGGCCCCCCAGTCCGCGG 1642 *|*|****|*|**|****||***|*|***|*****||***||**|*|*|* 1552 TCGTTGTCAACAAGAAAAAGAGAGAGAAAGATTCTCCATTCAAACTGAGT 1601 1643 CTCTGCCGCGGACTGGGGAGGCACTGCTTACAGTGCAAAGGCTGCCTTGG 1692 *|||***|*|**||******||*|||||*|*|*||||*****||**|**| 1602 -TCTAGTGAGC-CTCACTGTGCTCTGCT-AGATTGCATCA--TGTATCAG 1646 1693 GTAGAAATAGAAGGCTGAGAGGTAAAAGTGCCACTGGTTCTTCATCTACC 1742 ***|*|||*||*|||**|**||||*|*|****||**||*|**|***|*|| 1647 TCGGTAATGGACGGCAAAATGGTAGATGAAGAACCAGTGCCACTCTTGCC 1696 1743 ATTTTGCCATCCATCACTGATTGATACATGATACAATCCAACAGAGCACA 1792 **|**|||*||**|**|||****|**||***|****||**||*|***||| 1697 TCTCAGCCTTCTGTTCCTGCCCAAAGCAGCCT----TCGCACTGTAAACA 1742 1793 GTGAGGTTCACCAGAACTCAATTTGAATGGAGAGTCTTTTTCTCT-CTTT 1841 |||****||*||||**|*|****||***|**||*|******|*|**|*** 1743 GTGCC--TCCCCAGTCCGCGGCGTGGCCGCGGACTGGGGGGCCCCGCCGA 1790 1842 TTCTTGTTGACAACAACTCCATTATGATGTTTGCAAAGATGTCCAAACT- 1890 **|**|*|||***|***||******|**||*||****|*|||*|**|*|* 1791 CCCGGGCTGAGCCCGGGTCGGCAGGG--GTCTGG---GTTGTGCTCAGTG 1835 1891 TCTCCCAAATTTGCTGATCATAGAGTCTTGCTTGATCAGATGTGAGTTTC 1940 |||*|*|****|||****||**|*||*||**|**|||*|***|***|**| 1836 TCTTCTA----TGCCAGACAGTGGGTTTTT-TCAATCTGGGATATTTACC 1880 1941 ACATCTACCAGCTTTAAATCCTTCCGTCCATGAATGT------------- 1977 |||*||||***|***||**|**|||**||****|*||************* 1881 ACACCTACATCCACCAAGGCTGTCCAGCCTGTGAGGTAAGGGACAGGCTT 1930 1978 ---CTAAAAGTTTCCT-TATGTCGTCAGAACCTTGAGTTGTAATCACCAT 2023 ***||**|||*|*||**|**||*|**|***|****||*||*|***||*|| 1931 CACCTTTAAGATGCCGATGGGTGGGTATCCCAACTAGATGAAGGAACAAT 1980 2024 ATCTTGTGGTAGTAAACC-TATTACATAACTTAAT----ACTCCTGGCAT 2068 **|*******||*|||***|**|*||*||***|||****||***||**|| 1981 GACGCTGTAAAGAAAATTGTGCTCCAAAAACAAATGTCAACCAATGTAAT 2030 2069 TGCATCCT--CGATGTCTTGCATCAAGATGCCATGTGAATGTCTGCTGCC 2116 ||*|***|**|**|||||**||*||***|*|****|*|***|||*|||** 2031 TGGAGTTTTACTTTGTCTCTCAGCATATTCCTTACTCAGCATCT-CTGAT 2079 2117 ATTTTTGAAGCCCTTCTCATCATGTGGC--TTTCTAAAACAATGAATATA 2164 ||******|*|*|||**||**||*******||*|||||***|**|||||* 2080 ATGAGGTGATCACTTTCCAAAATCCAATCATTCCTAAATTCAGAAATATT 2129 2165 ATGCTTGTTGGC-TGGCTGATATAGTGCCAATTCCACAGGGTCTGTTGGA 2213 |*|*|***|**|*|**||*||**|****||**|****|**||*|||||** 2130 AAGATAACTTCCATTCCTTATCAACCAGCATCTTGGTAAAGTGTGTTGC- 2178 2214 GGCCCTTCAATGTCA-AGCCACAGTGTATTAGTGGGGTCTAACTTCTTTA 2262 **||**||||*||***|***|||****|**|*|**|*|*||**|*|**|| 2179 --CCTGTCAAGGTATGATTAACATACCAAAACTTTG-TGTAGTTGCAATA 2225 2263 CAGCCTCTTTAATCACTGCTTCTTGCATTTCAGTCAGGTTTG-CTAGTCT 2311 *||***|***|*|||*|**||||***||||*|*||****||**|*|||** 2226 -AGGGAC---ACTCATTAGTTCTCTAATTTTATTCTTCATTAACAAGTTA 2271 2312 TAGATTCTGACCGTTTTTCTCGGGTTGTCTCGGTCCAACTTGAGGT--TT 2359 |******|*|**|**||*|*|*|*|||*||**|***||*||||**|**|| 2272 TCTGAAATCAAGGCATT-CACTGTTTGGCTTAGA--AAATTGATTTCCTT 2318 2360 CTTTGTTAGATCAACACTTGTGTTGTCCCAAGATCTCCCAAGAATTTGTG 2409 |||||*|**||||******||*||***|**|**|||****|*|*|***** 2319 CTTTGATTCATCATTGAGAGTCTTTATCGCAT-TCTTATTATAGTCAAAA 2367 2410 ATCTGGAACCAATGTAAGGCCACCC-GTCACCTGAGAGACACAATTTA-- 2456 |*****|||***|***||**|*|***||||*******||****|||||** 2368 AGTCTTAACATGTCGCAGAACTCTGAGTCATGATTTTGATTACATTTAGC 2417 2457 TACAGAAGGTTCTCATAAGGATTTCGATTCCCAGGTTTCTCGTCTATAAA 2506 |||||*||**|*||**|||*|||||*|||*******||**|**||||*|| 2418 TACAGCAGTATTTCCAAAGCATTTC-ATT-------TTGGCTGCTATCAA 2459 2507 CATCCCCTCTTTTCGCT--TGACTTGCAGAGTTGATTTAATCAAGCTGGA 2554 |||||**||||***|****|*||*|*|*|***||***|**||***|||** 2460 CATCCATTCTTCCAGACAATAACCTCCTGGCATGTCCTT-TC---CTGAG 2505 2555 GAAATTATCAG-GAG--TGACCCTAATTGTTTCCAGCATGTTCCCACCGT 2601 ||***|*||||*||***|||****|||**||||*|**|**|*|*||**|| 2506 GAGTCTGTCAGAGACCATGAGAAGAATGCTTTCAAAGACCT-CTCAAAGT 2554 2602 CAAGTATTGAGGCGCCAGCTTTCACA-GCAGCTGACAGACTGAAGTTATA 2650 **||***||*****|****|*|||||*|*|**|||*||**||*****||* 2555 TGAGATGTGTTTTACT---TCTCACAAGGAAGTGA-AGGGTGTTCACATG 2600 2651 GCCA----GAGATGTTGATGGAGCTCTCGTCCTTAGTTACGATCTGCAAG 2696 |*||****||*||*|*||**||****|*||*|*****||******|*||| 2601 GTCAAATTGACATTTGGAAAGATAATTGGTACCACAATATTCAAAGGAAG 2650 2697 CATTCGTGCTCTAGAGTTAGCTTGTCAAGGTCATTTAAATTCGGATATTT 2746 *|******|***|**|*|*|*|*||||***|*|**||**|||***|**|* 2651 AAGGGTCACCACATTGATTGATAGTCACA-TAACATACTTTCCCTTCCTC 2699 2747 AACAGTGTATAACAGGCCCAGAGATGTCAACGCTTGGACCACACTATTCA 2796 |***|*||***|*|*||||**|******||****||***||**|*|||** 2700 ACATGGGTCGTAGAAGCCCCTA------AAGAGGTGCCTCATTCCATT-- 2741 2797 TCGTTTCTCCACCCTGGACAGTCATACAAGCGATTGTGAG-AGCTGGCAT 2845 ||*|*|||*|***|********||||||**|*|*|*|*|**||||****| 2742 TCTTATCTTCTTGC--------CATACACTCTACTCTCATCAGCTTTACT 2783 2846 GGAACCAAACTGATTATTCAGTTTTGATGGATCTGAGACATCCCAGATTC 2895 ***|**|||*|||*|*||***|**|**|***|||**|*|*|****|*||| 2784 AATATTAAATTGAATGTTGGATCCT--TCCTTCTTTGTCTT----GTTTC 2827 2896 TAACCACACCATTTCCAGCACCTCTCTGCTGTTGGAATCCCAGGGTCTTC 2945 ||**||*|*||||***||*|*|**|**||***|****|||*|*||***|* 2828 TA--CATAACATTGG-AGGATCCATAAGCCAGTCATGTCCTAAGGCAATT 2874 2946 AAGA-----TTTCTGACCTCTTTGTCAGTTGCAGCTGT-GACA-AATTAC 2988 *|||*****|***||*||****|*|*|||***|**|||*||***|||||| 2875 GAGAACCAGTGGATGGCCCAACT-TGAGTCAGACTTGTTGAGGCAATTAC 2923 2989 CCATGTACAGCCCTTGGGGACCTGACTCAGTCCTCTTTATCTTGTTCTTC 3038 |*|*||****|***|||******||||*|**|*||*|**||||**||*|* 2924 CAAGGT----CTTCTGGTTCATAGACTGACACATCATACTCTT--TCATA 2967 3039 AGTTTTTCCAAGTCTGATGCAAGCTCCATCAATTCATCTCTCCCCAGATC 3088 ||***|***|**||*||**||*|****|**||***||*|*|*|*|****| 2968 AGGACTGAGACATCAGAAACACGAATTAGGAAA--ATGTTTGCACCTCCC 3015 3089 TCCAATCTTGAATATGGTGTTTTTCTGGATGCTTTTCATAGACATG--AG 3136 |*||*|*|***|*|***|*||*||**|*||||*****|*|||*|||**|| 3016 TTCA-TATAATAAAAACTATTATTAAGCATGC-----AAAGAGATGGAAG 3059 3137 CCTATCCACTTCTTTGTTTAAATCCCTCAGCTTGTTCAGATCCTCTTCAC 3186 ***||*****|**|||***|||**||||*||*||*|*|******||**** 3060 TTCATTTGAGTGGTTGGCCAAAAGCCTCTGCATGGTAAAGGTGACTGAT- 3108 3187 CCCTTTTGTTCTTTCTGAGAGCCCTCTGCACTTGTGAAACCTGGTT--GA 3234 ***|*****|||*|*||****||***|**|**||||**|*|*|*****|| 3109 ---TGAAACTCTGTATGTAGACCTATTTTAAATGTGCCATCAGAACAGGA 3155 3235 AGTCGATGCTGTCAGCTATGAGCTTGGCATCTTTCAACACATCTGTTTTC 3284 **||**||||***|***|*||****|*****||**||*|*|*|**||||* 3156 CCTCCCTGCTAGGAAG-AGGAAGAAGATGAATTGAAAAAGACCACTTTTG 3204 3285 ACAGTGTGGGTGAACTGACTCAGGCCTCTTCTCAG--TGACTGAGTCCAC 3332 *****||***|||******|*|*|*|***|*|*||**||||*|***|||* 3205 TAGAGGTTAATGATGCCCTTGATGACAGCTATAAGGCTGACAGCCACCAA 3254 3333 CGAAAGCTGGGAATTTCCTTGGAGTGAGCCATAG-TGGCT---AATAACC 3378 *|**|**|***||**|*||||*||**||*||**|*|**|****||*||*| 3255 GGCGATGTTTAAAGCTTCTTGCAGAAAGACAGGGATCTCCTGAAAGAAGC 3304 3379 AAAGGATTTGAAATAAAGCTCAGTAGAAGAGTTAG-------ACACTTTG 3421 *||**|*|||****|*******|*||**|*||*||*******||||***| 3305 TAATAAGTTGCCCCATTTGCTGGCAGGTGTGTCAGCACTTCTACACCAAG 3354 3422 CCTAGG-----ATCCACTGTGCG------------ 3439 ||*||******|*|||*|**|||************ 3355 CCAAGCTGTTCAGCCAATAAGCGTGATCAAGAATC 3389