NC_005078 AY571904 1 CGCACATGTGATCCTAGGCGATTCTTGATCGCGCTTATTAGCTAACCAAT 50 *****|*|||*||**|**|**||||**|**|*||||**|**|*||*|*** 1 A----AAGTG-TCTAACTC--TTCT--ACTGAGCTTTATTTCAAATCC-- 39 51 TTAATTTGGTGTTGAAGTGTTGACACGCTCTCTAACACATGGGGCAGCTT 100 ****||||||**|*|*****|****|*|*|||*||***|*****|||||| 40 ----TTTGGTTATTAGCCACTATGGCTCACTCCAAGGAAATTCCCAGCTT 85 101 A---TCAGCT---TCTTTCAGGAGATTCCTGTTTTTCTACAGGAAG-CTC 143 ****|***||***||**|*||*|||**||||**|***|*||***|**||* 86 TCGGTGGACTCAGTCACTGAGAAGAGGCCTGAGTCAGTTCACCCACACTG 135 144 TGAACATCGCTTTAGTG---GCTGTTAGTCTCATAGCTGTCATCAAAGGC 190 ||||*|**|*|*|**||***|*||**|**||||||||||*||*||**|*| 136 TGAAAACAGATGTGTTGAAAGATGCCAAGCTCATAGCTGACAGCATCGAC 185 191 ATCATTAACCTTT-ACAAA---AGTGGTCTCTTCCAGTTCATCTTCTTTC 236 *|||***|**|||*||||****||*||*||||***|****|********* 186 TTCAACCAGGTTTCACAAGTGCAGAGGGCTCTCAGAAAGAACAAAAGGGG 235 237 TCCTCCTAGCAGGGAGGTCCTGCTCGGATGGCACATTCAAA---ATAGGC 283 |***********|*|****|||***|**|***|||***||****|||||| 236 TGAAGAGGATCTGAACAAGCTGAGGGATTTAAACAAAGAAGTGGATAGGC 285 284 CTACA-CACTGAGT----TCCAGTCAGTCACCCTTACCATGCAGAGACTT 328 **|***|**|||******|||||**|**||||*|***||*|****||**| 286 TCATGTCTATGAAAAGCATCCAGAAAAACACCATATTCAAGATTGGAGAT 335 329 TTAGCTAACCATTCA---AATGAGCTCCCATCTCTCTGC---ATGCTTAA 372 *|*|**|***||**|***|**|||||**||||***||*****|**||*|| 336 CTGGGGAGAGATGAATTGATGGAGCTTGCATCAGACTTGGAAAAACTGAA 385 373 CAATAGTTTTTATTATATGAGGGGAGGTGTGAACACCTTCCTGATTCGTG 422 *||*|***|**|****|****|**||||****|*****|****||**||* 386 GAACAAGATAAAGAGGACTGAGTCAGGTCCCCAAGGGCTGTACATGGGTA 435 423 -TTTCTGATATTT-CAGTCCTCATGAAGG--AGTATGATGTATCAATCTA 468 *|||*|*|*|**|*||*****||***|||**||*|***|**|**|**||* 436 ATTTGTCACAGCTGCAACTGACAAAGAGGTCAGAAATCTTGAAGACCCTG 485 469 TGA----ACCAGAAGACCT----TGGAAATTGTCT--TAACAAGTCTGAC 508 *||****|*|||*|||*******|||||||*||*|**|*|*||****|** 486 GGATTCCAACAGCAGAGAGGTGCTGGAAATGGTGTGGTTAGAATCTGGGA 535 509 TCAAGCTGGGCTATTCATTGGTTCTCAAATGCTTTGGGACATGACTGGCT 558 |****|*|**|*||**|*******|*|***|*||*|***||||*|*|*** 536 TGTCTCAGATCCATCAAAACTGAATAATCAGTTTGGTTCCATGCCAGCTC 585 559 TATGGATC-CTCCAATGCTATGTAGAAACAAGACAAAGAAGGAGGGATCT 607 |****|||*||***|||***|||**|*****||*|||**|*||****|*| 586 TCACAATCGCTTGTATGAC-TGTCCAGGGTGGAGAAACGATGAATAGTGT 634 608 AACATTCAATTCAACATCAGCAAAGCTGATGATGCCAGAGTGTATGGAAA 657 **********|**|||||*******|||*|*||*|*|**||**|****** 635 GGTCCAAGCGTTGACATCTCTGGGCCTGTT-ATAC-ACTGTTAAATATCC 682 658 GAAGATAAGAAATGGTATGAGGC-ATCTCTTCAGGG-GCTTCCATGACCC 705 |||**|||***|***|***|*||*|*||||**||***|**|*|*||**** 683 GAATTTAAATGACCTTGACAAGCTAACTCTAGAGCACGAATGCTTGCAGA 732 706 GTGTGAGGAAGGGAAAGTGTGCTACCTGACCATCAATCAGTGTGGTGACC 755 **||*|**||||**|*|*|*|||*|*|*|*||||**||*|**|**|*||* 733 TCGTAACTAAGG--ACGAGAGCTCCATCAACATC--TCTGGCTA-TAACT 777 756 CCAGTTCCTTTGACTACTGTGGCGTGAATCATCTTTCCAAATGTCAGTTT 805 *||||***|**|*||*|||||********|**||****|**||*|*||** 778 TCAGTCTGTCAG-CTGCTGTGAAAGCTGGCGCCTCAATACTTGACGGTGG 826 806 GACCATG-TGAACACCCTTCATTTC-CTTGTGAGAAGTAAGACACATC-- 851 ||*||||*||*|*||**||****||*||**|||*||*|****||**|*** 827 GAACATGCTGGAAACAATTAGGGTCACTCCTGATAATTTCTCCAGCTTGA 876 852 -----TCAACTTTGAGAGGTCTTTGAAA-----GCATTTTTCT---CATG 888 *****||||||*||**||******||||*****|*||*|||*|***|**| 877 TTAAATCAACTCTGCAAGTCAAGCGAAAAGAGGGGATGTTTATAGACGAG 926 889 GTCTCTGACAGAC----TCCTCAGGAAAGGACATGCCAGGAGGTTATTGT 934 ****|||**|**|****||||*|*||*|*********|**|**|***|*| 927 AAACCTGGGAATCGAAATCCTTATGAGAACCTTCTGTATAAATTGTGTCT 976 935 CTAGAGGAATGGATG--------TTGATAGCAG--CCAAAAT------GA 968 ||***|**|*||*||********|||*|**|||**|**||||******|| 977 CTCAGGTGACGGGTGGCCTTACATTGGTTCCAGATCACAAATTCTTGGGA 1026 969 AATGTTTCGGAAACACTGCTGTTG--CTAA--ATGTAATCAAAATCATGA 1014 *||*||**|**|||||***|||||**||||**|*|*||*|**||****|| 1027 GATCTTGGGACAACACAAGTGTTGATCTAACAAAGAAACCTCAAGTTGGA 1076 1015 CTCAGAGTTCT---GTGATATGCTGAGGCTATTCGACTAT--AACAAGAA 1059 |**|||***|****|**|*|*|*|*||**|*|**|||||***|||**||* 1077 CCGAGACAACCCGAGAAAAACGGTCAGAATCTAAGACTAGCAAACCTGAC 1126 1060 TGCAATA-AAGACCC-----TCAATGATGAATCAAAGAA---AGAAATCA 1100 ||*|||**||||**|*****|*||*||*|****||||||***|||***|| 1127 TGAAATGCAAGAAGCAGTGATTAAAGAGGCTGTAAAGAAGTTAGACCCCA 1176 1101 ATCTTCTAA----GCCAGACAGTGAATGCCTTAATCTCAGATAATTTGTT 1146 *|**|**|*****||**||||*||||*|*|*|*****||||***|*||** 1177 CTAATACACTGTGGCTTGACATTGAAGGGCCTCCAA-CAGACCCTGTGGA 1225 1147 AATGAAGAATAAAATTAAAGAGCTAATGAGCATCCCTTATTGTAATTACA 1196 |*||**|*|**|*||*|***|||*||**|||||****|*|**|**||**| 1226 ATTG--GCACTATATCAGCCAGCCAACAAGCATTATAT-TCATTGTTTTA 1272 1197 CAAAGTTTTGGTATGTCAATCATACCCTGACAGGGCAGCACACTCTTCCA 1246 *||||*******|||**||******|***|*|*|||||||*||**|**|| 1273 GAAAGCCACATGATGAGAAGGGCTTCAAAA-ATGGCAGCAGACATTCACA 1321 1247 AG--ATGTTGGTTGATAAGGAATGGAAGTT---ATCTTAACACTTCTGAA 1291 *|**||*|||*|**|**||**||*||*|*|***||***|**|*|**|*|* 1322 TGGCATCTTGATGCA--AGACATCGAGGATGCAATGCCAGGAGTATTAAG 1369 1292 TTCAGGAATGACTGGATTTTAGAGAG---TGATCACCTCATCTCAGAGAT 1338 ||**|*|||***|**|*|******||***||*|*|***||*||||**|*| 1370 TTATGTAATAGGTTTACTACCACAAGATATGGTGATTACAACTCAAGGTT 1419 1339 GTTAAG---TAAGGAATATGCT-GAAAGGCAAGGCAAAACCCCAATCACA 1384 *|*|*|***|||||||**|**|*||*|**||*||****|******|*|** 1420 CTGACGACATAAGGAAACTTTTAGACATTCATGGACGGAAGGATTTAAAG 1469 1385 TTAGTTGATAT-----TTGTTTCTGG---AGCACAATTTTCTTCACAGCA 1426 *|*||*|||*|*****|****||||****||||**|*|*|*|***||||| 1470 CTGGTAGATGTGAAACTCACATCTGATCAAGCAAGACTCTATGATCAGCA 1519 1427 TCATTG-------TTCCTTCATCTAGTCGGA-ATACCCACCCA------- 1461 ***|||*******||****|||||***|**|*||****|***|******* 1520 AATTTGGGAGAAGTTTGGACATCTTTGCAAACATCATAATGGAGTTGTTG 1569 1462 TCGACACCTCAAAG-GCGAA---GCCTGTCCTTTGCCTCATAAG--CTGG 1505 ||*|||****||||*|*|||***|*||*|||*||*|****|*||**|||| 1570 TCAACAAGAAAAAGAGAGAAAAAGACTCTCCATT-CAAATTGAGTTCTGG 1618 1506 ACAGCTTCGGAG------GTTGTAGATGTGGCAAATATCCCAGATTGAAG 1549 **|*|*||***|******||||*|**|||**||**||||****|*|||*| 1619 TGAACCTCACTGTGCTCTGTTGGAT-TGTATCATGTATCAATCAGTGATG 1667 1550 AAACCCACCATC-----TG--GCACAAAAGACA--TTAAACAC--AGCCA 1588 *|***||**||******||**|*||*|**|*||**||*|*|*|**||||* 1668 GATGGCAAAATGGTAGATGAAGAACCAGTGGCACTTTTACCTCTCAGCCT 1717 1589 AG-ACCCCTGCCGACCCGGGCCCAGCCCGGGTCGGCGGGGCC-CCCCAGT 1636 ***|***||*||*|*****|||****|***||**||*|*|||*||||||| 1718 TCTATTTCTACCCAAGGCAGCCTTTGCACTGTAAGCAGTGCCTCCCCAGT 1767 1637 CCGCGGCTCTGCCGCGGACTGGGGAGGCACTGCTTACAGTGCAAAGGCTG 1686 |||||||***||||||||||||||*|||*|*||**||***|****|||** 1768 CCGCGGCAGAGCCGCGGACTGGGG-GGCCCCGCCGACCCGGGCTGGGCCC 1816 1687 CCTTGGGTAGAAATAGAAGGCTGAGAGGTAAAAGTGCCACTGGTTCTTCA 1736 ***|*||*||***|****|||||*|***|*||*||**|**|*||*|**|| 1817 GGGTCGGCAGGGGTCTT-GGCTGTGT--TTAATGT--CTTTTGTGC--CA 1859 1737 TCTACCATTTTGCCATCCATCACTGATTGATACATGATACAATCCAACAG 1786 ******||**||***|*|*|||*|****||||**||**|||***|*|||* 1860 G-----ATGGTGGGTTTCTTCAATCTGGGATATTTGCCACAT--CTACA- 1901 1787 AGCACAGTGAGGTTCACCAGAACTCAATTTG-AATGGAGAGTCTTTTTCT 1835 |*|*|*|**|*|*|**||||**||*|****|*||*|||*||*|||***|* 1902 ACCTCCG--AAGCTGTCCAG--CTTATGAGGCAAAGGACAGGCTT---CG 1944 1836 CTCTTTTTCTTGTTGACAACAACTCCATTATGATGTTTGCAAAGATGTCC 1885 |*||||****|||*||*******|***|****||*|**|***|||||*** 1945 C-CTTTGAGGTGTCGA-------TGGGTGGGTAT-TCCGACTAGATGAAG 1985 1886 AAACTTCTCCCAAATTTGCTGATCATAGAGTCTTGCTTGATCAGATGTGA 1935 *|||*******||***|||||***|*|*|*|**||||****||||****| 1986 GAAC-------AATGATGCTGTGAAGAAAATTGTGCTC---CAGAAACAA 2025 1936 GTTTCACATCTACCAGCTTTAAATCCTTCCGTCCATGAATGTCTAAAAGT 1985 *|*|||**|**|***|*||****|**|*||*|*|*|****|**||***** 2026 ATATCAACTA-ATGTGATTGGGGTTTTGCCTTGCCTTTCAGCATA----- 2069 1986 TTCCTTATGTCGTCAGAACCTTGAGTTGTAATCACCATATCTTGTGGTAG 2035 |||||||***|*|*|*|*|**||||*||***|*|*||***||******|* 2070 TTCCTTA---CTTAACATCTCTGAGATGAGGTGATCA---CTCTCTAAAA 2113 2036 TAAACCTATTACATAACTTAATACTCCTGGCATTGCATCC--TCGATGTC 2083 |**|***|||*|**||*|*|**|*|**|***||**|*|||**||**|*|| 2114 TCCAGTCATTCCTGAATTCAGAAGTGTTAAGATAACTTCCATTCCTTATC 2163 2084 TTGCATCAAGATGCCATGTGAATGTCTGCTGCCATTTTTGAAGCCC-TTC 2132 ****|*|||*||**|*||**|**||*|||||||*|*|**|*******||* 2164 A---ACCAACAT--CTTGGAAGAGTGTGCTGCCCTGTCAGGGTATGATTG 2208 2133 TCATCATGTGGCTTTCTAAAACAATGAATATA-ATGCTTGTTGGCTGGCT 2181 *|||*******||||*|**||**|**|**|***|||||**||*|||***| 2209 ACATACCAAAACTTTGTGTAATTACAATAAGGGATGCTCATTAGCTCTTT 2258 2182 GATATAGTGC--CAATTCCACAGGGTCTGTTGG-AGGCCCTTCAATGTCA 2228 *||*|**|*|**||*|**||*|***||||*****|*|*|*||||*||||* 2259 AATTTTATTCTTCATTAACAAATTATCTGAGATTAAGGCATTCACTGTCT 2308 2229 AGCCACAGTGTATTAGTGGGGTCTAACTTCTTTACAGCCTCTTTAATCAC 2278 *||*****|**|**|*||***|||***||||||****|*||*||*|**** 2309 GGCT----TAGAAGATTGATTTCT---TTCTTTGATTCATCATTGA---- 2347 2279 TGCTTCTTGCATTTCAGTCAGGTTTGCTAGTCTTAGATTCTGACCGTTTT 2328 *|**||||**|||*||*||**|||***|||||**|*|**||*|*|*|*|* 2348 -GGGTCTTT-ATTGCATTCTTGTTA--TAGTCGAATAGCCTCAGCATATC 2393 2329 TCTCGGGTTGTCTCGGTCCAACTTGAGGTTTCTTTGTTAGATCAACACTT 2378 *|****|***|||**|||****||**|*||*|*||**|||**|||||*** 2394 ACA---GAACTCTGAGTCATGATTTTGATTACATT--TAG--CAACAGCA 2436 2379 GTGTTGTCCCAAGATCTCCCAAGAATTTGTGATCTGGAACCAATGTAAGG 2428 |||||**|**||*||*||*****|*||||****|||**|*|||******* 2437 GTGTTTCCGAAACATTTC-----ATTTTGG---CTGCTATCAA------- 2471 2429 CCACCCGTCACCTGAGAGACACAATTTATACAGAAGGTTCTCATAAGGAT 2478 *||*||*|**|***|||*|***|**|**|*********|*||*|*||||* 2472 -CATCCATTCCTCTAGACAATAACCTCCTGGCATGTCCTTTCCTGAGGAG 2520 2479 TTCGATTCCCAGGTTTCTCGTCTATAAACATCCCCTCTTTTCGCTTGACT 2528 |**|*****|||****|**|***|*|||*||*|*****||||******|| 2521 TCTGT----CAGAGACCATG---AGAAAAATGC-----TTTCAAAGACCT 2558 2529 TGCAGAGTTGATTTAATCAAGCTGGAGAAATTATCAGGAGTGACCCTAAT 2578 **||*||||||**|********||****|*||*|||**||*||****||* 2559 CTCAAAGTTGAGATG-------TGTCTTACTTCTCACAAG-GAAATGAAG 2600 2579 TGTTTCCAGCATGTTCCCACCGTCAAGTATTGAGGCGCCAGCTTTCACAG 2628 *||*|*||*||||*||**||*|*||**|****||**|********||||| 2601 GGTGTTCA-CATGGTCAAACTGACATTTGGAAAGATGATTCACGCCACAG 2649 2629 CAGCTGACAGA-CTGAAGTTATAGC-CAGA--GATGTTGATGGAGCTCTC 2674 *||***|**||*|||**||*|***|*|*||**||||*|*|*|*|||*|*| 2650 TAGTCAAAGGAACTGGGGTCACCACACTGATTGATGGTCAGGTAGCACAC 2699 2675 GT--CCTTAGTTACGATCTGCAAGCATTCGTGCTCTAGAGTTAGCTTGTC 2722 *|**||||**|*||******||*|*|**|***||**||||*|**||**|* 2700 TTTCCCTTCCTCACACGGGTCATGGAAGCCC-CTGAAGAGATGCCTCAT- 2747 2723 AAGGTCATTTAAATTCGGATATTTAACAGTGT-ATAACAGGCCCAGA-GA 2770 |***|***|||**|||******|**||**||**||*|***||***|**|| 2748 ACCATTTCTTATCTTCTTTCCATACACTCTGGCATCATCAGCTTTGCTGA 2797 2771 TGTCAACGCTTGGACCACACTATTCATCGTTTCTCCACCCTGGACAGT-C 2819 |||**|**********|*|****||*|**|||*||*****|**|||***| 2798 TGTTGAATTGAATGTTAGATCCCTCCTTCTTTGTCTTGTTTCTACATAGC 2847 2820 ATACAAGCGATTGTGAGAGCTGGCATGGAACCAAACTGATTATTCAGTTT 2869 ||***||*|||****|***|*|*||||***|*||*|***|*|*******| 2848 ATTGGAG-GATCCATAAGCCAGTCATGTCCCAAAGCATTTGAGAACCAAT 2896 2870 TGATGGATCTGAGACATCCCAGATTCTAACCACACCATTTCCAGCACCTC 2919 **||*|**|*|****|**|****||*|*|**|||**|||||||****||* 2897 GAATAGCCCAGCTTGAGTCAGACTTGTTAAGACA--ATTTCCAAGGTCT- 2943 2920 TCTGCTGTTGGAATCCCAGGGTCTTCAAGATTTCTGACCTCTTTGTCAGT 2969 ||||*|*******||**||**|**|**|***|*||**|*||*|****|*| 2944 TCTGGT-------TCATAGATTGATACATCATACTC-CTTCATGAGGACT 2985 2970 TGCAGCTGTGACAAATTACCCATGTACAGCCCTTGGGGACCTGACTCAGT 3019 ***|**|**||*|*|**|**||*|*|**|***||*****|****||||*| 2986 GAAATATCAGAAACACGAATCAGGAA--GGTGTTCACACCTCCCCTCA-T 3032 3020 CCTCTTTATCTTGTTCTTCAGTTTTTCCAAGTCTGATGCAAGCTCCATCA 3069 ****|**|***|*||*||*||**|*****||***||||**|||||**|** 3033 ATAATAAAAACTATTGTTAAGCATGC---AGAGAGATGGGAGCTCATTTG 3079 3070 ATTCATCTCTCCCCAGATCTCCAATCTTGAATATGGTGTTTTTCTGGATG 3119 |*|**|***|**|*|*|**||****|*||***|*||||**|**|||||** 3080 AATGGT---TAGCTAAAAGTCTCTGCATGGTAAGGGTGACTGACTGGAAC 3126 3120 CTTTTCATAGACATGAGCCTATCCACTTCTTTGTTTAAATCCCTCAGCTT 3169 ****|||**|****|*||||||****||***|||***|**|***|||*** 3127 ----TCAGTGTGTAG-GCCTATT---TTGAATGTGCCATCCGAGCAGGAC 3168 3170 GTTCAGATCCTCTTCACCCCTTTTGTTCTTTCTGAGAGCCCTCTGCACTT 3219 *|*|***********|*********|****|***||||*||*||****|| 3169 CTCCCTGCTAGGAGGAGAAAGAAGATGAACTGGAAGAGACCACTT---TT 3215 3220 GTGAAACCTGGTTGAAGTCGATGCTGTCAGCTATGAGCTTGGCATCTTTC 3269 ||*|||**|***|||*|*|**||*||*||||||||||**|**||*|***| 3216 GT-AAAGGTTAATGATGCCTTTGATGACAGCTATGAGACTAACAGC---C 3261 3270 AACACATCTGTTTTCACAGTGTGGGTGAACTGACTCAGGCCTCTTCTCAG 3319 |**|*|*|**|*||||*||**|***||*|***|**||||**|||*||*|* 3262 ACTAAAGCGATGTTCAGAGCTTCC-TGTAGAAAAACAGGAATCTCCTGAA 3310 3320 TGACTGAGTCCACCGAAAGCTGGGAATTTCCTTGGAGTGAGCCATAGTGG 3369 *||**************|||||**||**|*|*****|||****|*||*|* 3311 AGA--------------AGCTGATAAGCTGCCCCATGTGTTAGAGAGCGT 3346 3370 CTAATAACCAAAGGATTTGAAATAAAGCTCAGTAGAAGAGTTAGACACTT 3419 *|*|**||*******||**|*|**||**|*|*|*|****|||||**|*|* 3347 GTCAACAC-------TTCAACACCAAATTAAATTG----GTTAGCTAATA 3385 3420 TGCCTAGGATCCACTGTGCG 3439 *||****||||*|***|*** 3386 AGCGC--GATCAAGAATC-- 3401