NC_004296 AY179173 1 CGCACAGTGGATCCTAGGCTATTGGATTGCGCTTTGCTTTTGTCATTTTG 50 *******|||*|*|***||||||**|*||*****|*|**||***|*|**| 1 ATTTT--TGGTTGC---GCTATTCAAGTG-----TCCCATTTAAAATGGG 40 51 GCAGATAGTCTCAGTTCTTTGTTGC-GTGCATACAACACAACAATCTGGC 99 *||*||||||*||*|||||****|**||||*|*****|**|*||***||* 41 ACAAATAGTCACA-TTCTTCCAGGAAGTGCCTCATGTAATAGAAGA-GGT 88 100 GATGAGTGCCTCAAAGGAAATAAAATCCTTTTTGTGGACACAATCTTTGA 149 |||||**************|*|***||||**|||*|****|*||**|*|* 89 GATGA--------------ACATTGTCCTCATTGCGCTGTCTATACTAGC 124 150 GGAGG-GAATTATCTGGTTACTGCTCCAACATCAAACTACAGGTGGTGAA 198 *|*|**|||***||||***|****|*|*||||****|**|*|*||||**| 125 TGTGCTGAAGGGTCTGTACAACTTTGCGACATGTGGCCTC-GTTGGTTTA 173 199 AGATGCCCAGGCTCTTTTACATGGACTTGACTTCTCCGAAGTCAGTAATG 248 *|*|||*****|||||*|*****|*|**|*|||***|*|||*||||**|* 174 -GTTGCTTTC-CTCTTGTTGTGTGGCAGGTCTTGCAC-AAG-CAGTCTTT 219 249 TTCAACGG-TTGATGCGCAAGGAGAGAAGGGATGACAATGATTTGAAACG 297 ***||*||*||*|||*||****|||****|||****||******||*||* 220 ACAAAGGGGTTTATGAGCTCC-AGACTCTGGAACTAAACATGGAGACACT 268 298 GTTGAGGGACCTAAATCAAGCGGTCAACAATCTTGTTGAATTAAAATCAA 347 ****|*|**|*|***||***|***||**||*******|||**|*|*|||* 269 CAATATGACCATGCCTCTCTCTTGCACAAA-------GAACAACAGTCAT 311 348 CTCAACAAAAGAGTATACTGAGAGTTGGGACTCTAACCTCAGATGACTTA 397 |***|||*|||*||***|***|||***|||||**|||******||||**| 312 CATTACATAAGGGTGGGCAATGAGACAGGACTAGAACTGACCTTGACCAA 361 398 TT--AATCTTAGCCGCTGATCTAGAGAAGTTAAAGTCAAA--GGTGATCA 443 ****|*|*|||*****|*|||*|*|*|**||**|*||*|***|*||*||| 362 CACCAGTATTAT----TAATC-ATAAATTTTGCAATCTATCTGATGCTCA 406 444 GAACAGAAAGGCCATTAAGTGCAGGTGTCTATATGGGCAACCTAAGCTCA 493 *||*|**||**||*|||*|**||*|****|||**|***||*||*|*||** 407 CAAGAAGAA--CCTTTATGACCACGCTCTTATGAGCATAATCTCAACTTT 454 494 CAGCAACTTGACCAAAGAAGAGCTCTCCTGAATATGATAGGAATGAGTGG 543 |****|||||*|||****|*|**||***|*|*|||||**|*||||||**| 455 CC---ACTTGTCCATCCCAAACTTCAA-TCAGTATGAG-GCAATGAGCTG 499 544 TGGTAATCAAGGGGCTCGGGCTGGGAGAGATGGAGTGG-TGAGAGTTTGG 592 ||*|**||||*||******|*|**|*|*|**|*|*****||||*****|* 500 TGATT-TCAACGGAGGAAAGATTAGTGTGCAGTACAACCTGAGCCACAGC 548 593 GATGTGAAAAATGCAGAGTTGCTCAATAATCAGTTCGGGACCATGCCAA- 641 *|||******||||||***********||*||*|**||*||**|**|||* 549 TATGCTGTGGATGCAGCC---------AAACATTGTGGCACAGTTGCAAA 589 642 --GTCTGACACTGGCATGTCTGACAAAA-CAGGGGCAGGTTGACTTGAAT 688 **||*|***||*|*|*|***|||**|***|**|||**||**|*||**|*| 590 TGGTGTCTTACAGACTTTCATGAGGATGGCTTGGGGTGGAAG-CTACATT 638 689 GATGCAG-TACAAGCATTGACAGATTTGGGTTTGATCTACACAGCAAAGT 737 |*|***|*|*||*||**||**||||**|**|*|**|*|****||**|*** 639 GCTCTTGATTCAGGCCATGGTAGATGGGACTGTATTATGACTAGTTATCA 688 738 ATCCC-AACACTTCAGACTTAGACAGGCTGACTCAAAGTCATCCCATCCT 786 ||**|*||*|*||||||*|***|||**|||*****|***|**||*||*|| 689 ATATCTAATAATTCAGAAT---ACAACCTGGGAAGATCACTGCCAATTCT 735 787 AAATATGATTGACACCAAGAAAA-----GCTCTTTGAATATCTCAGGTTA 831 *||*|**||***|*****|**|******||||*|***|*|****|****| 736 CAAGACCATCTCCCATTGGTTATCTCGGGCTCCTCTCACAGAGGACTAGA 785 832 TAATTTTAGCTTGGGTGCAGCTGTGAAGGCAGGAGCTTGCATGCTGGATG 881 *|**||||**||*|**|*||******|||||*****||*||||***||** 786 GACATTTATATTAGTAGAAGACTACTAGGCACAT--TTACATG---GACA 830 882 GTGGCAATATGTTGGAGACAATCAAGGTGTCACCTCAGACAATGGATGGT 931 *||*||***|*|*|*||*|||****||***||||***|**|****||*|| 831 CTGTCAGACTCT-GAAGGCAA----GGACACACCAGGGGGAT---ATTGT 872 932 ATCCTCAAATCCATTTTAAAGGTCAAGAAGGCTCTTGGAATGTTCATTTC 981 *|***||*||**||**|||**|**|||**|*****|**||||*|****** 873 CTGACCAGATGGATGCTAATTG--AAGCTGAGC--TAAAATGCTTCGGGA 918 982 AGACACCCCTGGTGAAAGGAATCCTTATGA-AAACATACTCTACAAGATT 1030 |*|||*|**|||**|||*|*|*****||||*||||||**|****|*||*| 919 ACACAGCTGTGGCAAAATGTA-----ATGAGAAACATGATG---AGGAAT 960 1031 TGTTTGTCAGGAGATGGATGGCCATATATTGCATCAAGAACCTCAATAAC 1080 |*|*||*||*|****||*||****|***||**||*||*||*|*||*|*|* 961 TTTGTGACATGCTGAGGCTGTT--TGACTTCAATAAACAAGC-CATTCAA 1007 1081 AGGAAGGGCCTGGGAAAACA------CTGTC-GTTGATCTGGAATCAGAT 1123 |||**|******|*|**|||******|**||*|||||||***||**||** 1008 AGGCTGAAAACTGAAGCACAAATGAGCATTCAGTTGATCAATAA--AGCA 1055 1124 GGGAAGCCACAGAAAGCTGACAGCAACAATTCCAGTAAATCCCTGCAGTC 1173 |*|||**|***||*|**||||**||||*|*|***|*|*|**|*|****** 1056 GTGAATGCTTTGATAAATGAC--CAACTAATAATGAAGAATCATTT---- 1099 1174 GGCAGGGTTTACCGCTGGGCTTACCTATTCTCAGCTGATGACCCTCAAGG 1223 *||*||***||****||||**|*||*||*||****|*||*||*****||* 1100 -GCGGGACATAA---TGGGAATTCC-ATACTG---TAATTAC-----AGC 1136 1224 ATGCAATGCTGCAACTTGACCCAAATGCTAAGACCTGGATGGACATTGAA 1273 |*|*|*||*|*|**|||*|||**|***|||****|||||*********** 1137 AGGTATTGGTAC--CTTAACCACACAACTA----CTGGA----------- 1169 1274 GGAAGACCTGAAGATCCAGTGGAAATTGCCCTCTATCAACCAAGTTCAGG 1323 **||*||*|*|****|||***|***|||*|*|*||||||****|||||** 1170 --AAAACATCACTGCCCAAATG---TTGGCTTGTATCAAATG-GTTCATA 1213 1324 CTGCTACATACACTTCTTCCGTGAACCTACTGATTTAAAGCAGTTCAAGC 1373 |****||*****|**|||***|||***||*|||***|*|**||*|*|**| 1214 CCTGAACGAGACCCGCTTTTCTGACGATATTGAACAACA--AGCTGA--C 1259 1374 AGGATGCTAAGTACTCACATGGGATTGATGTCACAGACCTCTTCGCTACA 1423 |**|||*|*|***||*|*|||**|**||******|||***|*|*|**|** 1260 AACATGATCA---CTGAGATGTTACAGAA-----AGAGTACATGGAAAGG 1301 1424 CAACCGGGCTTGACCAGTGCTGTCATTGATGCACTCCCCCGGAATATGGT 1473 ||***||*****||||*||**|||*|*|*||**|||********|*||*| 1302 CAGG-GGAAGACACCATTGG-GTC-TAGTTGACCTCTT------TGTGTT 1342 1474 CATTACCTGTCAGGGGTCCGATGACATAAGGAAACTCCTTGAATCACAAG 1523 ||**||**||******|*|*||**|||*||*|***|||||*|****|*|| 1343 CAGCACAAGT------TTCTATCTCATTAGCATCTTCCTTCAC---CTAG 1383 1524 GAAGAAAAGACATTAAACTAATTGATATTGCCCTCAGCAAAACTGATTCC 1573 **|*||*|***|*|*|****|***||||||***|**||||**|***|*|| 1384 TTAAAATACCGACTCAT---AGGCATATTG---TGGGCAAGTCATGTCCC 1427 1574 AGGAAGTATGAAAATGCAGT-CTGGGACCAGTATAAAGACTTATGCCACA 1622 |*|****|**|***||*|***|**||*|***|*|*****|**|**|*|*| 1428 AAGCCTCAC-AGGTTGAATCACATGGGCATATGTTCCTGCGGACTCTATA 1476 1623 TGCACACAGGTGTCGTTGTTGAAAAGAAGAAAAGAGGCGGTAAAGAGGAA 1672 **||**|*|||||***|||**||**|||||***|||*|****|**|||** 1477 AACAGCCCGGTGTGCCTGTAAAATGGAAGAGGTGAGACTCCCATCAGGGC 1526 1673 ATAACCCCTCACTGTGCACTAATGGAC--TGCATCATGTTTGATGCAGCA 1720 ****|||*|*||****|*|**||*|*|**||**|||*|***|***|**|| 1527 C---CCCGTGACCCACCGCCTATTGGCGGTGGGTCACGGGGGCGTC--CA 1571 1721 GTGTCAGGAGGACTGAACACATCGGTTTTGAGAGCAGTGCTGCCCAGAGA 1770 *|**|||||*||||**|****|||*|*||**||*||******|*|*|*|* 1572 TTTACAGGACGACTCTAGGTGTCGATGTTCTGAACACCATGTCTCTGGGT 1621 1771 TATGGTGTTCAGAACATCGACACCTAGAGTCGTTCTGTAAATG--GACGC 1818 *****||*||**|**|*|*|****|**||||*|*|||**|*||**|***| 1622 AGCACTGCTCTCAGGACCAATGTTTTCAGTCCTCCTGATACTGCTGCATC 1671 1819 CCCCGTGACCCACCGCCAATAGGCGGTGGGTCACGGGGGC---CCTGACA 1865 ***|*|||**||**|*|*||**|*|****||*|*|||******|||**** 1672 AAACATGATGCA--GTCCATCAGTGCACAGTGAGGGGTTATTTCCTCTTT 1719 1866 AGGGTCTCATCTCTTCCATTTCACAGGCACACCAGGCTGTTTGTAGAGTC 1915 ***|*|||*|*|||||**||**|||***|||||*|**||**|||*|**|* 1720 GCCGCCTCTTTTCTTCTTTTCAACAACGACACCTGTGTGCATGTGGCATA 1769 1916 CACAG--GAACAAATGCCCATATGATTCAATCTGTGAGGTTTGGGACACG 1963 *******|*||**||*||||*|***|*||*|||***|**||**|||**|* 1770 GGTCTTTGTACTGAT-CCCAGAC--TGCATTCTCATACTTTCTGGAGTCA 1816 1964 ACTTGCCTA----CAATATGCCTATGAGTTGGTATTTTGACTAG---GTG 2006 *|||***|*****||||||***|*|*|*|||*|*|*||**||*****||| 1817 GCTTTGTTGAGGGCAATATCAAT-TAACTTGATGTCTTTTCTTCCTTGTG 1865 2007 A----AGGAAGATGCTAATAAGATAGAA------ACTTGTACTGAACACA 2046 |****||||***|*||*||***||*|*|******||**|||*|||*||** 1866 ACTCAAGGAGTTTCCTTATGTCATCGGACCCCTGACAGGTAATGACCATG 1915 2047 AA------GAGGTCAACTAGACC--CAATGGTGTCTTCCCCTGCCTCTCC 2088 ********|||**||*|||*|*|**||*||||*****||**|****|**| 1916 TTCCGGGGGAGTGCATCTATAACAGCACTGGTCAAGCCCGGTTGTGCAGC 1965 2089 ATATACTCCTTCTGTAACA-TCTCA-GTGATCATATTGTCAGCTTGTTGT 2136 |*|*|***||****||*||*||*||*||||**||*|*|*||*||||*|** 1966 AAAGAGGTCTGTGATATCAATCCCATGTGAGTATTTAG-CATCTTGCT-- 2012 2137 TCAATATCATCAGAAAAGTGGGTCTCGTTCAAGTATGAACCATTTGATAC 2186 |*||***|*|||*|**|||*|||*****|||*|*|*|||***|*||*||* 2013 TGAACTGCTTCAAATCAGTAGGT-----TCACGGAAGAAGTGTATG-TAG 2056 2187 AAGCCAACATTTGGGCAGTGATGTTC---TCCCAGTAGTTGTGTGGTTGA 2233 *||||***|*||||****|*|*|**|***|*|||***|*|*|***|*|** 2057 CAGCCTGAACTTGGTTGATAAAGGGCAATTTCCACCGGATCTTCAGGTCT 2106 2234 GGTACCAATA--CTTGCTGTAATTACAGTATGG---AATTCCCATGATGT 2278 *****||||***|*|*|*****|||***|*|||***||*|**||**||** 2107 TCCTTCAATGTCCATCCAAGTCTTAGCATTTGGGTCAAGTTGCAGCATTG 2156 2279 CC-CGTAGATGGTTCTTCATTATAAGTTGGTCATTTATCAAAGCATTTAC 2327 |**|*|*||*|||**|****|***|||*|||*|*****|**|||**|*|* 2157 CATCTTTGAGGGTCATAAGCTGAGAGTAGGTAAG----CCCAGCGGTAAA 2202 2328 TGCTTTGTTGATCAACTGAATGCTCATTTGTGCTTCAGCTTTCAACCTTT 2377 **||**|**|||*****|*||**|**||*|***|***|||**||*|*||| 2203 CCCT--GCCGATTGCAGGGAT--TTGTTGGAATTGTTGCTGCCAGC-TTT 2247 2378 GAATGGCTTGTTTGTTGAAGTCAAA-CAGCCTCAGCATGTCACAAAATTC 2426 ***||||||*|****|||***||*|*||*|**|||**|*|**|*|***|| 2248 CTGTGGCTTTTCATCTGATTCCAGATCAACAACAGTGTTTTCCCAGGCTC 2297 2427 CTCATCAT-----GCTTCTCATTACATTTT---GCCACAGCTGTGTTCCC 2468 *||*|**|*****|*||||***|*||*|*|***|||||***|****|**| 2298 TTCCTGTTATTGAGGTTCTTGATGCAATATATGGCCACCCGTCCCCTGAC 2347 2469 GAAGCATTTTAGTTCAGCCTCAATT----AG-----CATCCACCTGG--- 2506 **|**|*|*|*||**||**|***||****||*****|*|*||||*||*** 2348 AGACAAATCTTGTAGAGTATGTTTTCATAAGGGTTCCTTTCACCAGGGGT 2397 2507 -TCAGACAATATC--CCCCTGGTGTGTCTTTACCTTCAGAATC----TGA 2549 *||*||*|**|*|**|||**|*****||||*|||||*|*|||*****||| 2398 GTCTGAAATGAACATCCCAAGAGCCTTCTTGACCTTTAAAATGGATTTGA 2447 2550 CAGTG---TCCATGTGAATGTGCCTAG-CAATCTTCTACTAATATAAATA 2595 ***||***|||||*||**||*|***|**|**|**|***||***|*|*||* 2448 GGATGCCATCCAT-TGTCTGAGGTGACACCTTGATTGTCTCCAACATATT 2496 2596 TCTCTAGTCCTTTGTGAGAGGAGCCCGAGATAACCGATGGGAGATGGTCT 2645 *|*****|||****||**||***||*|***|*||*|*||*******|*|| 2497 GCCACCATCCAGCATGCAAGCT-CCTGCCTTCACAGCTGCACCCAAG-CT 2544 2646 CGAGA-ATTGGCAGTGATCTTCCCAG-GTTGTATTTTGGATTA-TCAGAT 2692 **||**||***|*|*||**|||**||*|*|*|**||||*||*|*|||*|| 2545 AAAGTTATAACCTGAGACATTCAAAGAGCTTTTCTTTGTATCAATCATAT 2594 2693 ATTG-ATAACTAGTCATA-ATACAGTC---CCAGTTGCCACGGCCTGAGT 2737 *|*|*||*****|*|*|**|**|||*|***||||*|***|*|***||*|* 2595 TTAGGATGGGGTGACTTTGAGTCAGCCTATCCAGGTCTGAAGTATTGGGA 2644 2738 CAAGA-GCAATGTAGCTCCCACCCCAAGCCATCC-TCATAAAAGTCTGTA 2785 *|****||**|||||*||**||||*||*|**||**|**|***|*|***|* 2645 TACTTTGCTGTGTAGATCAAACCCAAATCTGTCAATGCTTGTACTGCATC 2694 2786 ACACA---CCATTTGCAACAGTACC---ACAATGGTTGGCTGCATCCCCA 2829 |**||***|*|*||||****||******|*|***|*|*|***||**|*** 2695 ATTCAAGTCAACTTGCCCTTGTTTTGTTAAACATGCTAGTGTCAGGCTTG 2744 2830 GCATAGCTGTGACTCAGGTTGTACTGCA-CACTA-ATCTTTCCCCCATTA 2877 ||||*|****||*|**|*||||***|||*|*||**||*||||*|*****| 2745 GCATGGTCCCGAATT-GATTGTTGAGCAACTCTGCATTTTTCACATCCCA 2793 2878 AAATCGCAGCTCATTGCCTCATACTGATTGAAGTTGGGGATGGACAAGTG 2927 ||*||*||*|*|*****|||***|*|***||**|****|||*|**|**** 2794 AACTCTCACCACCCCATCTCTCCCAGCCCGAGCTCCTTGATTGCTACCAT 2843 2928 GAAAGTTGAGATTATGCTCATAAGAGCGTGGTCATAGAGGTTCTTTTTGT 2977 **|**||***||*||*||*|*||||||*|*|*|*|*|******||**||| 2844 TCA--TTCCTATCATACTTAGAAGAGC-TCGCCTTTGGTCAAGTTGCTGT 2890 2978 GGGCATCAGACAG---ATTGCAAAATTTGTGATTAATAATGCTCGTGT-- 3022 |*||*||||***|***||****|*|**||***|*|||*****|**|||** 2891 GAGC-TCAGGTTGCCCATATAGACACCTGCACTCAATGGCCTTTCTGTCC 2939 3023 TGGTCAAGGTCAGTTCTAGTCCTGTCTCATTGCCCACC--ATTATATAAT 3070 ||||||***|**|*|||***|*|*|||***|***||*|**|***||**|* 2940 TGGTCACTTTT-GATCTCAACTTCTCTAGATCAGCAGCTAAGACTAGCAA 2988 3071 GATGACTGTTGTTCTTTGTGCAGGAGAGAGG-CATGGTCATATTGAGTG- 3118 |****|||**|||*******||******||**||***|**|*||||||** 2989 GTCATCTGAGGTTAGAGTCCCAACTCTTAGCACACTCTTTTGTTGAGTTG 3038 3119 --------TCTCCATGTTTAGTTCCAGAGTC--TGAAGCTCATAAACCCC 3158 ********||**||*|*||**|**|*|**|***|*|*|**|*|*||||*| 3039 ATTTCAATTCAACAAGGTTGTTGACCGCTTGATTTAGGTCCCTCAACCGC 3088 3159 TTTATAA-AGACTGGTTGTGCAAGACCTACCACACAACAGGAGGAAAGTG 3207 ||*|*|**|***|**|*********|||**|*||**|***|**|||**|* 3089 TTCAAATCACTATCATCCCTTCTCTCCTTGCGCATCAGCCGTTGAACATT 3138 3208 ACCAAA--CCAACAAGGCCACACGTTGCAAAATTGTACAGAC--CTTTCA 3253 ||**|***|**|*|||*|*|**|**||||*||**|****|*|**|||||| 3139 ACTGACTTCGGAGAAGTCAAGTCCATGCAGAAGAGCTTGGGCATCTTTCA 3188 3254 GCAC-TGCTAGTACA-GACAGTGCAATGA--GAACAATGT--TCATCACC 3297 *|||*|||***|**|*|***|*|||*|*|**|*|||||****||*|||** 3189 CCACCTGCAGTTTGATGTTGGAGCAGTAACCGGACAATTCCCTCCTCAAA 3238 3298 TCTTCTATT-ACATGAGGCACTTC-CTGGAAGAATGTCACTATTTGTCCC 3345 **||*|*|**|||*||*|*||||**||********|*||||**|*|*|** 3239 GATTGTGTCCACAAGAAGGACTTTACTTCCTTTGAGGCACTCATCGCCAG 3288 3346 ATT------TTAAATA---GGACACTTGAATTGCG-----CAACCAAAAA 3381 |||******||*||||***|*|*****||**||*|*****|**||||||| 3289 ATTGTTGTGTTGAATACACGCAGCAGGGAGCTGAGGCTATCTGCCAAAAA 3338 3382 TGCCTAGG---ATCCCCGGTGCGC-- 3402 ||*|*|*****|**|*|**|*|**** 3339 TGACAAAAGCAAAGCGCAATCCAATT 3364