Severe Acute Respiratory Syndrome (SARS)
Protein sequences from SARS coronavirus (isolate Tor2), complete genome
gi|30271926|ref|NC_004718.3|		  SARS Home

mA - pre-computed multiple alignment of coronavirus proteins. 3D - pre-computed alignments of proteins with known 3D structure.
mA - entire ORF product; mA - processing product (mature peptide)
Links in the TBLASTN field provide direct access to a TBLASTN search against all available SARS-CoV sequences in GenBank (all seq) or only complete genomes of SARS-CoV (complete).

Location Length Accession Blink Gene TBLASTN mA 3D Product
265.3398,13398..21485 7074 NP_828849 30124074 sars1 complete - - orf1ab polyprotein (pp1ab)
265..804179 NP_82886029837495 sars1 all seq--leader protein nsp1-pp1a/pp1ab
805..2718 639NP_828861 29837496 sars1 complete--counterpart of MHV p65 protein nsp2-pp1a/pp1ab
2719..84842422 NP_828862 29837497 sars1 complete--multidomain protein nsp3-pp1a/pp1ab
8485..9984500 NP_904322 34555778 sars1 complete--transmembrane protein nsp4-pp1a/pp1ab
9985..0902306 NP_828863 29837498 sars1 complete3C-like proteinase nsp5-pp1a/pp1ab (3CL-PRO)
1090..3772290 NP_828864 29837499 sars1 complete-transmembrane protein nsp6-pp1a/pp1ab
11773..202183 NP_828865 29837500 sars1 all seq-protein nsp7-pp1a/pp1ab
12022..2615198 NP_828866 29837501 sars1 all seq-protein nsp8-pp1a/pp1ab
12616..2954113 NP_828867 29837502 sars1 all seq-RNA-binding protein nsp9-pp1a/pp1ab
12955..3371139 NP_828868 29837503 sars1 all seq-protein nsp10-pp1a/pp1ab
13372..3398,13398..6166932 NP_828869 29837504 sars1 all seqRNA-dependent RNA polymerase nsp12-pp1ab (RdRp)
16167..969601 NP_828870 29837505 sars1 all seq-zinc-binding NTPase/helicase nsp13-pp1ab (ZD NTPase/HEL)
17970..9550527 NP_828871 29837506 sars1 all seq-nsp14-pp1ab (nuclease ExoN homolog)
19551..20588346 NP_828872 29837507 sars1 all seq-replicative endoribonuclease NendoU nsp15-pp1ab
20589..21482298 NP_828873 30133975 sars1 all seq-ribose 2'-O-methyltransferase nsp16-pp1ab (2'-o-MT)
265..13413 4383NP_828850 29836495 sars1 complete--orf1a polyprotein (pp1a)
13372..1341013 NP_904321 34555777 sars1 all seq--putative peptide nsp11-pp1a (C-terminal cleavage product of pp1a)
21492..25259 1256 NP_828851 29836496 sars2 complete-E2 glycoprotein precursor
25268..26092 275NP_82885230124073 sars3a complete-- protein 3a (sars3a)
25689..26153 155 NP_828853 29836498 sars3b all seq-- putative protein (sars3b)
26117..26347 77 NP_828854 29836499 sars4 all seq-small envelope protein E
26398..27063 222 NP_828855 29836504 sars5 all seq-protein M
27074..27265 64 NP_828856 29836500 sars6 all seq--putative protein (sars6)
27273..27641 123 NP_828857 29836501 sars7a all seq-- putative protein (sars7a)
27638..27772 45 NP_84917530524940 sars7b all seq-- putative protein (sars7b)
27779..27898 40 NP_849176 30524941 sars8a all seq-- putative protein (sars8a)
27864..28118 85NP_849177 30524942 sars8b complete-- putative protein (sars8b)
28120..29388 423 NP_828858 29836503 sars9a all seq- nucleocapsid protein N
28130..28426 99NP_828859 29836502 sars9b all seq-- putative protein (sars9b)