Severe Acute Respiratory Syndrome (SARS)

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Pre-computed multiple alignment of the coronavirus RNA-dependent RNA polymerases (nsp12-pp1ab)
NP_828869.1 SADAST-----FLNRVCGVSA-ARLTPCGTGTSTDVVYRAFDIYNEKVAGFAKFLKTNCC SARS-CoV
NP_840009.1 SFTVDQSY---LFKRVRGSSA-ARLEPCN-GTDPDHVSRAFDIYNKDVACIGKFLKTNCS TGEV    
NP_839965.1 STDYG------LFKRVRGSSA-ARLEPCN-GTDTQHVYRAFDIYNKDVACLGKFLKVNCV PEDV    
NP_742138.1 SKDTN------FLNRVRGTSVDARLVPCASGLSTDVQLRAFDICNASVAGIGLHLKVNCC BCoV    
NP_835352.1 SFDNS------YLNRVRGSSA-ARLEPCN-GTDIDYCVRAFDVYNKDASFIGKNLKSNCV HCoV-229E
NP_740616.1 SKDTN------FLKRVRGTSVNARLVPCASGLDTDVQLRAFDICNANRAGIGLYYKVNCC MHV     
NP_740629.1 SVAGASDFDKNYLNRVRGSSE-ARLIPLASGCDPDVVKRAFDVCNKESAGMFQNLKRNCA IBV     
Consensus   S.pss      hhpRVRGoSl ARL.PCs G.psD...RAFDlhN.psAshub.LKsNCh


NP_828869.1 RFQEK--DEEGNL--LDSYFVVKRHTMSNYQHEETIYNLVKDCPAVAVHDFFKFRVDGDM SARS-CoV
NP_840009.1 RFRNL------DK--HDAYYIVKRCTKTVMDHEQVCYNDLKDSGAVAEHDFFTYKEGRCE TGEV    
NP_839965.1 RLKNL------DK--HDAFYVVKRCTKSAMEHEQSIYSRLEKCGAIAEHDFFTWKDGRAI PEDV    
NP_742138.1 RFQRV--DENGDK--LDQFFVVKRTDLTIYNREMECYERVKDCKFVAEHDFFTFDVEGSR BCoV    
NP_835352.1 RFKNV------DK--DDAFYIVKRCIKSVMDHEQSMYNLLKGCNAVAKHDFFTWHEGRTI HCoV-229E
NP_740616.1 RFQRV--DEDGNK--LDKFFVVKRTNLEVYNKEKECYELTKECGVVAEHEFFTFDVEGSR MHV     
NP_740629.1 RFQELRDTEDGNLEYLDSYFVVKQTTPSNYEHEKSCYEDLKS-EVTADHDFFVFNKN--- IBV     
Consensus   RFppl      pb  .D.aalVKRopboshp+EpphYp.lKpo.llAcHDFFpac...sb


NP_828869.1 VPHISRQRLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDY---FNK-KDWYDFV SARS-CoV
NP_840009.1 FGNVARRNLTKYTMMDLCYAIRNFDEKNCEVLKEILVTVGACTEEF---FEN-KDWFDPV TGEV    
NP_839965.1 YGNVCRKDLTEYTMMDLCYALRNFDENNCDVLKSILIKVGACEESY---FNN-KVWFDPV PEDV    
NP_742138.1 VPHIVRKDLTKYTMLDLCYALRHFDRNDCMLLCDILSIYAGCEQSY---FTK-KDWYDFV BCoV    
NP_835352.1 YGNVSRQDLTKYTMMDLCFALRNFDEKDCEVFKEILVLTGCCSTDY---FEM-KNWFDPI HCoV-229E
NP_740616.1 VPHIVRKDLSKFTMLDLCYALRHFDRNDCSTLKEILLTYAECEESY---FQK-KDWYDFV MHV     
NP_740629.1 IYNISRQRLTKYTMMDFCYALRHFDPKDCEVLKEILVTYGCIEDYHPKWFEENKDWYDPI IBV     
Consensus   hsplsRpcLTKYTMhDLCYALRpFDcppCpsLK=ILl.husCpppa   Fpp KpWaD.l


NP_828869.1 ENPDILRVYANLGERVRQSLLKTVQFCDAMRDAGIVGVLTLDNQDLNGNWYDFGDFVQVA SARS-CoV
NP_840009.1 ENEAIHEVYAKLGPIVANAMLKCVAFCDAIVEKGYIGVITLDNQDLNGNFYDFGDFVKTA TGEV    
NP_839965.1 ENEDIHRVYALLGTIVARAMLKCVKFCDAMVEQGIVGVVTLDNQDLNGDFYDFGDFTCSI PEDV    
NP_742138.1 ENPDIINVYKKLGPIFNRALVSATEFADKLVEVGLVGILTLDNQDLNGKWYDFGDYVIAA BCoV    
NP_835352.1 ENEDIHRVYAALGKVVANAMLKCVAFCDEMVLKGVVGVLTLDNQDLNGNFYDFGDFVLCP HCoV-229E
NP_740616.1 ENPDIINVYKKLGPIFNRALLNTAKFADALVEAGLVGVLTLDNQDLYGQWYDFGDFVKTV MHV     
NP_740629.1 ENSKYYVMLAKMGPIVRRALLNAIEFGNLMVEKGYVGVITLDNQDLNGKFYDFGDFQKTA IBV     
Consensus   EN.cI.pVY..LG.lh.pAhLpsl.FhD.hV=.GhVGVlTLDNQDLNGpaYDFGDFsbsl


NP_828869.1 PGCGVPIVDSYYSLLMPILTLTRALAAESHMDADLAKP-LIKWDLLKYDFTEERLCLFDR SARS-CoV
NP_840009.1 PGFGCACVTSYYSYMMPLMGMTSCLESENFVKSDIYGSDYKQYDLLAYDFTEHKEYLFQK TGEV    
NP_839965.1 KGMGVPICTSYYSYMMPVMGMTNCLASECFVKSDIFGEDFKSYDLLEYDFTEHKTALFNK PEDV    
NP_742138.1 PGCGVAIADSYYSYMMPMLTMCHALDCELYVNNAYR-----LFDLVQYDFTDYKLELFNK BCoV    
NP_835352.1 PGMGIPYCTSYYSYMMPVMGMTNCLASECFMKSDIFGQDFKTFDLLKYDFTEHKEVLFNK HCoV-229E
NP_740616.1 PGCGVAVADSYYSYMMPMLTMCHALDSELFVNGTYR-----EFDLVQYDFTDFKLELFTK MHV     
NP_740629.1 PGAGVPVFDTYYSYMMPIIAMTDALAPERYFEYDVHKG-YKSYDLLKYDYTEEKQELFQK IBV     
Consensus   PGhGlshhpSYYSYMMPhhsMophLssE.ahpsph.     paDLlpYDFT=.Kb.LFpK


NP_828869.1 YFKYWDQTYHPNCINCLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTG SARS-CoV
NP_840009.1 YFKYWDRTYHPNCSDCTSDECIIHCANFNTLFSMTIPMTAFGPLVRKVHIDGVPVVVTAG TGEV    
NP_839965.1 YFKYWGLQYHPNCVDCSDEQCIVHCANFNTLFSTTIPITAFGPLCRKCWIDGVPLVTTAG PEDV    
NP_742138.1 YFKHWSMPYHPNTVDCQDDRCIIHCANFNILFSMVLPNTCFGPLVRQIFVDGVPFVVSIG BCoV    
NP_835352.1 YFKYWGQDYHPDCVDCHDEMCILHCSNFNTLFATTIPNTAFGPLCRKVFIDGVPVVATAG HCoV-229E
NP_740616.1 YFKHWSMTYHPNTCECEDDRCIIHCANFNILFSMVLPKTCFGPLVRQIFVDGVPFVVSIG MHV     
NP_740629.1 YFKYWDQEYHPNCRDCSDDRCLIHCANFNILFSTLIPQTSFGNLCRKVFVDGVPFIATCG IBV     
Consensus   YFKaWsbpYHPNo.=CpD=pCIlHCANFN.LFS.slP.TsFGPLhRplalDGVPhVlohG


NP_828869.1 YHFRELGVVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNV SARS-CoV
NP_840009.1 YHFKQLGIVWNLDVKLDTMKLSMTDLLRFVTDPTLLVASSPALLDQRTVCFSIAALSTGI TGEV    
NP_839965.1 YHFKQLGIVWNNDLNLHSSRLSINELLQFCSDPALLIASSPALVDQRTVCFSVAALGTGM PEDV    
NP_742138.1 YHYKELGIVMNMDVDTHRYRLSLKDLLLYAADPALHVASASALYDLRTCCFSVAAITSGV BCoV    
NP_835352.1 YHFKQLGLVWNKDVNTHSTRLTITELLQFVTDPTLIVASSPALVDKRTVCFSVAALSTGL HCoV-229E
NP_740616.1 YHYKELGVVMNMDVDTHRYRLSLKDLLLYAADPALHVASASALLDLRTCCFSVAAITSGV MHV     
NP_740629.1 YHSKELGVIMNQDNTMSFSKMGLSQLMQFVGDPALLVGTSNNLVDLRTSCFSVCALTSGI IBV     
Consensus   YHaKpLGlVhNbDlp.cp.+Lohp=LLbalsDPsL.lASuslLlDbRTsCFSVAAlooGl


NP_828869.1 AFQTVKPGNFNKDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCD SARS-CoV
NP_840009.1 TYQTVKPGHFNKDFYDFITERGFFEEGSELTLKHFFFAQGGEAAMTDFNYYRYNRVTVLD TGEV    
NP_839965.1 TNQTVKPGHFNKEFYDFLLEQGFFSEGSELTLKHFFFAQKVDAAVKDFDYYRYNRPTVLD PEDV    
NP_742138.1 KFQTVKPGNFNQDFYDFILSKGLLKEGSSVDLKHFFFTQDGNAAITDYNYYKYNLPTMVD BCoV    
NP_835352.1 TSQTVKPGHFNKEFYDFLRSQGFFDEGSELTLKHFFFTQKGDAAIKDFDYYRYNRPTMLD HCoV-229E
NP_740616.1 KFQTVKPGNFNQDFYEFILSKGLLKEGSSVDLKHFFFTQDGNAAITDYNYYKYNLPTMVD MHV     
NP_740629.1 THQTVKPGHFNKDFYDFAEKAGMFKEGSSIPLKHFFYPQTGNAAINDYDYYRYNRPTMFD IBV     
Consensus   p.QTVKPGpFNp=FYDFl.ppGhhcEGSplpLKHFFFsQpGpAAlpDapYY+YNbPThhD


NP_828869.1 IRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQD SARS-CoV
NP_840009.1 ICQAQFVYKIVGKYFECYDGGCINAREVVVTNYDKSAGYPLNKFGKARLYYETLSYEEQD TGEV    
NP_839965.1 ICQARVVYQIVQRYFDIYEGGCITAKEVVVTNLNKSAGYPLNKFGKAGLYYESLSYEEQD PEDV    
NP_742138.1 IKQLLFVLEVVYKYFEIYDGGCIPASQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQD BCoV    
NP_835352.1 IGQARVAYQVAARYFDCYEGGCITSREVVVTNLNKSAGWPLNKFGKAGLYYESISYEEQD HCoV-229E
NP_740616.1 IKQLLFVLEVVNKYFEIYEGGCIPATQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQD MHV     
NP_740629.1 ICQLLFCLEVTSKYFECYEGGCIPASQVVVNNLDKSAGYPFNKFGKARLYYE-MSLEEQD IBV     
Consensus   IpQlbhlhpll.+YF=hY=GGCIsAppVlVpNhpKSAGaPhNKFGKA.LYYEshSaEEQD


NP_828869.1 ALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGA SARS-CoV
NP_840009.1 ALFALTKRNVLPTMTQMNLKYAISGKARARTVGGVSLLSTMTTRQYHQKHLKSIAATRNA TGEV    
NP_839965.1 ELYAYTKRNILPTMTQLNLKYAISGKERARTVGGVSLLSTMTTRQYHQKHLKSIVNTRGA PEDV    
NP_742138.1 EIYAYTKRNVLPTLTQMNLKYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGV BCoV    
NP_835352.1 AIFSLTKRNILPTMTQLNLKYAISGKERARTVGGVSLLATMTTRQFHQKCLKSIVATRNA HCoV-229E
NP_740616.1 EIYAYTKRNVLPTLTQMNLKYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGV MHV     
NP_740629.1 QLFEITKKNVLPTITQMNLKYAISAKNRARTVAGVSILST