Severe Acute Respiratory Syndrome (SARS)

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Pre-computed multiple alignment of the coronavirus nsp9-pp1a/pp1ab proteins
NP_828867.1 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNNSKGGRFVLALLSDHQDLKWARFPKSD SARS-CoV
NP_840007.1 NNEIMPGKLKERAVRASATLDGEAFGSGKALMASESGKSFMYAFIASDNNLKYVKWESNN TGEV    
NP_839963.1 NNEIIPGKLKQRSIKA--EGDG-IVGEGKALYNNEGGRTFMYAFISDKPDLRVVKWEFDG PEDV    
NP_742136.1 NNELMPAKLKTQVVNSGPDQTCNTPT--QCYYNNSNNGKIVYAILSDVDGLKYTKILKDD BCoV    
NP_835350.1 NNEIMPGKMKVKATKG--EGDGGITSEGNALYNNEGGRAFMYAYVTTKPGMKYVKWEHDS HCoV-229E
NP_740614.1 NNELMPQKLRTQVVNSGSDMNCNTPT--QCYYNTTGTGKIVYAILSDCDGLKYTKIVKED MHV     
NP_740627.1 NNELMPHGVKTKACVAGVDQAHCSVES-KCYYTNISGNSVVAAITSSNPNLKVASFLNEA IBV     
Consensus   NNElhP..l+ppsh.u  p.ps..ss  phhYpppss.phhhAhloppssLKhs+h.pps


NP_828867.1 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ SARS-CoV
NP_840007.1 DI--IPIELEAPLRFYVDGANGPEVKYLYFVKNLNTLRRGAVLGYIGATVRLQ TGEV    
NP_839963.1 GC--NTIELEPPRKFLVDSPNGAQIKYLYFVRNLNTLRRGAVLGYIGATVRLQ PEDV    
NP_742136.1 GN-FVVLELDPPCKFTVQDVKGLKIKYLYFVKGCNTLARGWVVGTISSTVRLQ BCoV    
NP_835350.1 GV--VTVELEPPCRFVIDTPTGPQIKYLYFVKNLNNLRRGAVLGYIGATVRLQ HCoV-229E
NP_740614.1 GN-CVVLELDPPCKFSVQDVKGLKIKYLYFVKGCNTLARGWVVGTLSSTVRLQ MHV     
NP_740627.1 GN-QIYVDLDPPCKFGMKVGVKVEVVYLYFIKNTRSIVRGMVLGAISNVVVLQ IBV     
Consensus   Gs  l.lEL=PPh+F.hpsspG.plKYLYFlKshNpL.RGhVlG.luuTVRLQ      


Similarities are highlighted by colors, if at least 80% of residues in a column are identical or fall into at least one of the following amino acid groups: aromatic (FHWY), aliphatic (ILVA), hydrophobic (ACFILMVWY), alcohol (STC), charged (DEHKR), positive (HKR), negative (DE), polar (CDEHKNQRST), tiny (AGS), small (ACDGNPSTV), or bulky (EFIKLMQRWY). Mouse-over the accession numbers on the left for full protein names or click for a corresponding sequence record. Abbreviated virus names are shown in italics on the right.


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