Microbial Genome Annotation Tools

GLIMMER is a system for finding genes in microbial DNA, especially the genomes of bacteria and archaea. GLIMMER (Gene Locator and Interpolated Markov ModelER) uses interpolated Markov models to identify coding regions.
  • Delcher AL, Harmon D, Kasif S, White O, Salzberg SL. Improved microbial gene identification with GLIMMER, Nucleic Acids Research 27:23 (1999), 4636-4641.
  • Salzberg S, Delcher A, Kasif S, White O. Microbial gene identification using interpolated Markov models, Nucleic Acids Research 26:2 (1998), 544-548.


  • Download GLIMMER from the Center for Bioinformatics and Computational Biology.

    Upload your sequence from file:

    Or copy/paste your sequence FASTA here:



    Additional parameters:
    Genetic code: Topology:
    11 (Bacteria, Archaea)
     4 (Mycoplasma/Spiroplasma)
    circular
    linear



    19 December 2014, 20:00