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Viruses   ssRNA viruses   ssRNA positive-strand viruses, no DNA stage  
  Flaviviridae - 93 complete genomes
sorted by Host
Flavivirus  [54] Hepacivirus  [12] Pegivirus  [8] Pestivirus  [11]
unclassified Flaviviridae  [8]
* The list view for each taxonomy node shows only the next level of sublineages.
* Unclassified/unassigned names are written in copper

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Genome Accession Source information Segm Length  Protein  Neighbors Host Created Updated
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Ilomantsi virus NC_024805 isolate:M0724 - 10365 nt invertebrates 09/11/2014 07/12/2016
Kama virus NC_023439 strain:LEIV-20776Tat - 10688 nt invertebrates 02/13/2014 02/13/2014
Lammi virus NC_024806 strain:Mekrijarvi 2007; isolate:M0719 - 10320 nt 1  invertebrates 09/11/2014 07/12/2016
Macrosiphum euphorbiae virus 1 NC_028137 isolate:K01 - 22780 nt invertebrates 11/01/2015 11/01/2015
Nhumirim virus NC_024017 strain:BrMS-MQ10 - 10891 nt invertebrates 04/16/2014 11/20/2014
Nienokoue virus NC_024299 - 10878 nt invertebrates 06/13/2014 09/09/2016
Soybean cyst nematode virus 5 NC_024077 strain:ScV5 - 19199 nt invertebrates 05/15/2014 11/06/2014
Tyuleniy virus NC_023424 strain:LEIV-6C - 10673 nt 1  invertebrates 02/06/2014 02/06/2014
Atypical porcine pestivirus 1 NC_030653 isolate:Bavaria S5/9 - 10908 nt vertebrates 07/25/2016 07/25/2016
Border disease virus NC_003679 strain:X818; Clover Lane - 12333 nt 10  vertebrates 05/15/1998 02/10/2015
Bovine viral diarrhea virus 1 NC_001461 strain:NADL - 12573 nt 46  vertebrates 08/02/1993 02/10/2015
Bovine viral diarrhea virus 2 NC_002032 strain:C413; sub-species:border disease virus strain C413; common:BVDV-2 - 12255 nt 44  vertebrates 06/11/1997 02/10/2015
Bovine viral diarrhea virus 3 Th/04_KhonKaen NC_012812 strain:Th/04_KhonKaen - 12337 nt 11  vertebrates 06/17/2009 01/07/2010
Cacipacore virus NC_026623 strain:BeAn 3276000 - 10284 nt vertebrates 03/06/2015 03/06/2015
Classical swine fever virus NC_002657 strain:strain Eystrup - 12301 nt 95  vertebrates 01/28/2001 02/10/2015
Equine hepacivirus JPN3/JAPAN/2013 NC_024889 strain:JPN3 - 9355 nt 1  vertebrates 09/18/2014 01/30/2015
Equine pegivirus 1 NC_020902 isolate:C0035 - 11197 nt vertebrates 04/05/2013 06/09/2016
Hepatitis GB virus B NC_001655 - 9399 nt 9  vertebrates 10/07/1999 02/10/2015
Jutiapa virus NC_026620 strain:JG-128 - 10125 nt vertebrates 03/06/2015 03/06/2015
Norway rat pegivirus NC_025679 isolate:NrPgV/NYC-E13 - 10023 nt vertebrates 11/19/2014 11/19/2014
Norway rat pestivirus NC_025677 isolate:NrPV/NYC-D23 - 12983 nt vertebrates 11/19/2014 11/19/2014
Pegivirus A NC_001837 - 9550 nt 129  vertebrates 09/23/1997 06/10/2016
Pestivirus giraffe-1 H138 NC_003678 isolate:giraffe-1 H138 - 12602 nt 1  vertebrates 10/16/1999 07/26/2016
Pestivirus strain Aydin/04-TR NC_018713 strain:Aydin/04-TR - 12292 nt 1  vertebrates 10/04/2012 10/04/2012
Porcine pestivirus isolate Bungowannah NC_023176 isolate:Bungowannah - 12656 nt vertebrates 01/02/2014 01/02/2014
Pronghorn antelope pestivirus NC_024018 - 12273 nt vertebrates 04/21/2014 11/06/2014
Rodent pegivirus NC_021154 isolate:CC61 - 11279 nt vertebrates 05/01/2013 06/09/2016
Simian pegivirus NC_024377 strain:SPgVkrc; isolate:SPgVkrc_RC08 - 9525 nt 129  vertebrates 06/24/2014 06/24/2014
Sokoluk virus NC_026624 strain:LEIV-400K - 10242 nt vertebrates 03/06/2015 03/06/2015
Bovine hepacivirus NC_026797 isolate:GHC25 - 8850 nt 4  vertebrates, human 04/13/2015 06/17/2016
GB virus C NC_001710 - 9392 nt 129  vertebrates, human 01/27/1996 12/08/2008
toggle on/offHepatitis C virus serotype:1a; isolate:H77 2 19089 nt vertebrates, human 08/09/1997 06/17/2016
Hepatitis C virus genotype 2 NC_009823 strain:HC-J6CH - 9711 nt 1562  vertebrates, human 10/01/2007 08/23/2016
Hepatitis C virus genotype 3 NC_009824 isolate:NZL1 - 9456 nt 1562  vertebrates, human 10/01/2007 08/23/2016
Hepatitis C virus genotype 4 NC_009825 isolate:ED43 - 9355 nt 1562  vertebrates, human 07/09/1997 08/23/2016
Hepatitis C virus genotype 5 NC_009826 strain:EUH1480 - 9343 nt 1562  vertebrates, human 09/12/1997 08/23/2016
Hepatitis C virus genotype 6 NC_009827 isolate:Th580 - 9628 nt 1562  vertebrates, human 10/01/2007 08/23/2016
Human pegivirus 2 NC_027998 isolate:UC0125.US - 9867 nt 9  vertebrates, human 10/08/2015 05/16/2016
Norway rat hepacivirus 1 NC_025672 isolate:NrHV-1/NYC-C12 - 8976 nt vertebrates, human 11/19/2014 11/19/2014
Norway rat hepacivirus 2 NC_025673 isolate:NrHV-2/NYC-E43 - 8568 nt vertebrates, human 11/19/2014 11/19/2014
Rodent hepacivirus NC_021153 isolate:RHV-339 - 8879 nt vertebrates, human 05/01/2013 02/10/2015
Aedes flavivirus NC_012932 strain:Narita-21 - 11064 nt 2  vertebrates, invertebrates, human 07/24/2009 07/18/2016
Alkhumra hemorrhagic fever virus NC_004355 strain:1176 - 10685 nt 25  vertebrates, invertebrates, human 09/29/2001 12/08/2008
Apoi virus NC_003676 strain:ApMAR - 10116 nt vertebrates, invertebrates, human 05/19/2000 02/10/2015
Aroa virus NC_009026 strain:Bussuquara virus; isolate:BeAn 4073 - 10815 nt 3  vertebrates, invertebrates, human 02/20/2007 08/14/2009
Bagaza virus NC_012534 strain:DakAr B209 - 10941 nt 12  vertebrates, invertebrates, human 04/06/2009 04/06/2009
Cell fusing agent virus NC_001564 strain:Galveston - 10682 nt 1  vertebrates, invertebrates, human 08/03/1993 07/18/2016
Chaoyang virus NC_017086 isolate:HLD115 - 10733 nt 1  vertebrates, invertebrates, human 07/10/2012 07/09/2016
Culex flavivirus NC_008604 strain:Tokyo - 10837 nt 22  vertebrates, invertebrates, human 11/30/2006 06/28/2016
Dengue virus 1 NC_001477 type:1 - 10735 nt 4055  vertebrates, invertebrates, human 02/28/1997 09/15/2015
Dengue virus 2 NC_001474 strain:16681 - 10723 nt 4055  vertebrates, invertebrates, human 08/02/1993 09/15/2015
Dengue virus 3 NC_001475 isolate:D3/H/IMTSSA-SRI/2000/1266 - 10707 nt 4055  vertebrates, invertebrates, human 08/02/1993 09/14/2015
Dengue virus 4 NC_002640 - 10649 nt 4055  vertebrates, invertebrates, human 01/03/2001 02/11/2016
Donggang virus NC_016997 isolate:DG0909 - 10791 nt vertebrates, invertebrates, human 03/23/2012 07/02/2016
Edge Hill virus NC_030289 strain:YMP 48 - 10206 nt vertebrates, invertebrates, human 06/10/2016 06/10/2016
Entebbe bat virus NC_008718 strain:UgIL-30 - 10510 nt 2  vertebrates, invertebrates, human 12/27/2006 12/08/2008
Hanko virus NC_030401 - 10158 nt vertebrates, invertebrates, human 06/30/2016 07/12/2016
Ilheus virus NC_009028 strain:Original - 10755 nt 2  vertebrates, invertebrates, human 02/20/2007 04/15/2010
Japanese encephalitis virus NC_001437 - 10976 nt 228  vertebrates, invertebrates, human 08/02/1993 02/10/2015
Kamiti River virus NC_005064 isolate:SR-82 - 11375 nt 1  vertebrates, invertebrates, human 08/13/2003 06/22/2016
Karshi virus NC_006947 strain:LEIV 2247; serotype:tick-borne encephalitis group - 10653 nt 3  vertebrates, invertebrates, human 04/07/2005 12/01/2009
Kedougou virus NC_012533 strain:DakAar D1470 - 10723 nt vertebrates, invertebrates, human 04/06/2009 04/06/2009
Kokobera virus NC_009029 strain:AusMRM 32 - 10874 nt 4  vertebrates, invertebrates, human 02/20/2007 12/04/2013
Langat virus NC_003690 strain:TP21 - 10943 nt 2  vertebrates, invertebrates, human 06/11/2000 11/30/2009
Louping ill virus NC_001809 strain:369/T2 - 10871 nt 4  vertebrates, invertebrates, human 04/29/1997 02/10/2015
Mercadeo virus NC_027819 isolate:ER-M10 - 10938 nt 1  vertebrates, invertebrates, human 09/14/2015 07/18/2016
Modoc virus NC_003635 strain:M544 - 10600 nt vertebrates, invertebrates, human 02/23/2002 05/06/2009
Montana myotis leukoencephalitis virus NC_004119 - 10690 nt vertebrates, invertebrates, human 08/22/2002 05/06/2009
Mosquito flavivirus NC_021069 isolate:LSFlaviV-A20-09 - 10865 nt 1  vertebrates, invertebrates, human 04/22/2013 02/24/2014
Murray Valley encephalitis virus NC_000943 - 11014 nt 14  vertebrates, invertebrates, human 11/02/1999 02/10/2015
Ntaya virus NC_018705 isolate:IPDIA - 10943 nt 1  vertebrates, invertebrates, human 10/04/2012 12/04/2013
Omsk hemorrhagic fever virus NC_005062 strain:Bogoluvovska - 10787 nt 3  vertebrates, invertebrates, human 08/12/2003 12/01/2009
Paraiso Escondido virus NC_027999 isolate:Ecuador2012 - 10761 nt vertebrates, invertebrates, human 10/08/2015 10/08/2015
Parramatta River virus NC_027817 isolate:92-B115745 - 10893 nt vertebrates, invertebrates, human 09/14/2015 07/25/2016
Powassan virus NC_003687 strain:LB - 10839 nt 16  vertebrates, invertebrates, human 07/26/1993 12/08/2008
Quang Binh virus NC_012671 isolate:VN180 - 10865 nt 1  vertebrates, invertebrates, human 05/11/2009 06/28/2016
Rio Bravo virus NC_003675 strain:RiMAR - 10140 nt 1  vertebrates, invertebrates, human 03/03/2000 02/10/2015
Sepik virus NC_008719 strain:MK7148 - 10793 nt 1  vertebrates, invertebrates, human 12/27/2006 12/08/2008
Spanish goat encephalitis virus NC_027709 isolate:AstGoatIREC2011 - 10870 nt vertebrates, invertebrates, human 08/18/2015 08/18/2015
Spondweni virus NC_029055 strain:SM-6 V-1 - 10290 nt vertebrates, invertebrates, human 02/05/2016 02/11/2016
St. Louis encephalitis virus NC_007580 strain:Kern217 - 10940 nt 10  vertebrates, invertebrates, human 11/04/2005 12/08/2008
Tamana bat virus NC_003996 - 10053 nt 1  vertebrates, invertebrates, human 04/17/2002 02/10/2015
Tembusu virus NC_015843 strain:JS804 - 10990 nt 70  vertebrates, invertebrates, human 07/15/2011 08/15/2013
Tick-borne encephalitis virus NC_001672 - 11141 nt 131  vertebrates, invertebrates, human 09/05/1995 02/10/2015
Usutu virus NC_006551 strain:Vienna 2001 - 11066 nt 92  vertebrates, invertebrates, human 12/17/2004 06/20/2012
Wesselsbron virus NC_012735 strain:SAH177 - 10814 nt 2  vertebrates, invertebrates, human 06/02/2009 01/07/2010
toggle on/offWest Nile virus strain:NY99; isolate:385-99 2 21991 nt vertebrates, invertebrates, human 10/19/2007 04/14/2016
Yellow fever virus NC_002031 strain:17D vaccine strain - 10862 nt 68  vertebrates, invertebrates, human 11/18/1986 02/10/2015
Yokose virus NC_005039 strain:Oita 36 - 10857 nt vertebrates, invertebrates, human 07/22/2003 08/11/2006
Zika virus NC_012532 strain:MR 766 - 10794 nt 121  vertebrates, invertebrates, human 04/06/2009 02/08/2016
Culiseta flavivirus NC_030290 strain:502-13 - 10864 nt 06/10/2016 06/10/2016
Nakiwogo virus NC_030400 strain:Uganda08 - 10122 nt 06/30/2016 07/12/2016
Pegivirus B NC_030291 strain:68 - 9630 nt 06/10/2016 06/10/2016
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