Flu home Database Alignment Genome Set Tree BLAST FTP Help Contact us References Influenza Virus Textbook of Influenza Karl G. Nicholson, Robert G. Webster, Alan J. Hay Blackwell Publishers; 1st edition, 1998 Genetics of Influenza Viruses D.A. Steinhauer and J.J. Skehel Annu. Rev. Genet., 2002,36:305-32. Predicting the Evolution of Human Influenza A R.M. Bush, C.A. Bender, K. Subbarao, N.J. Cox, W.M. Fitch Science, 1999, 286(5446):1921-1925.   Hemagglutinin sequence clusters and the antigenic evolution of influenza A virus J.B. Plotkin, J. Dushoff, S.A. Levin Proc. Natl. Acad. Sci. U. S. A. 2002, 99(9):6263-6268     Molecular Systematics, Molecular Evolution and Phylogenies Molecular Systematics David M. Hillis (Ed.), Craig Moritz (Ed.) Sinauer Associates, Inc., 1997 Inferring Phylogenies Joseph Felsenstein Sinauer Associates, Inc., 2004 Molecular Evolution: A Phylogenetic Approach Roderic D. M. Page, Edward C. Holmes Blackwell Publishers, 1998 Molecular Evolution and Phylogenetics Masatoshi Nei and Sudhir Kumar Oxford University Press, 2000     Clustering Algorithms Cluster Analysis Brian S. Everitt, Sabine Landau, Morven Leese. Arnold Publishers; 4th edition, 2001. Mathematical Classification and Clustering Boris Mirkin. Kluwer Academic Publishers, 1996. Cluster Analysis for Researchers H. Charles Romesburg. Lulu Press, 2004 (reprint from Wadsworth, Inc. 1984). Data Clustering: a review A. K. Jain, M. N. Murty, P.J. Flynn ACM Computing Surveys, 1999, 31: 264 - 323.     The Neigbor-Joining Method The neighbor-joining method: a new method for reconstructing phylogenetic trees N. Saitou, M. Nei Mol Biol Evol., 1987, 4(4):406-25.     Non-Linear Mapping A nonlinear mapping for data analysis J.W. Sammons IEEE Transactions on Computers 1969, C-18:401-409.   On the Initialisation of Sammon's Nonlinear Mapping B. Lerner, H. Guterman, M. Aladjem, I. Dinstein Pattern Analysis & Applications, 2000, 3(1), 61 - 68.     Approximate Least-Squares Methods An approximate least-squares algorithm (Internal documentation) National Center for Biotecnology Information, National Library of Medicine, Bethesda, MD, May 2005.     Sequence Alignement Basic local alignment search tool S.F. Altschul, W. Gish, W. Miller, E.W. Myers, D.J. Lipman J. Mol. Biol., 1990, 215(3):403-10.   MUSCLE: multiple sequence alignment with high accuracy and high throughput R. C. Edgar Nucleic Acids Res., 2004, 32(5):1792-7.   MUSCLE v6.0 web site R. C. Edgar, C. B. Do and S. Batzoglou     < Models of Amino Acid Subsitution used for Distance Calculation PHYLIP - a free package of programs for interferring phylogenies: protdist - a program for computing distance measures for protein sequences Joseph Felsenstein Department of Genome Sciences, University of Washington, Seattle   A metric model of amino acid substitution W. Xu, D.P. Miranker Bioinformatics, 2004, 20(8):1214-21. Erratum in Bioinformatics, 2004, 20(18):3716.   | Disclaimer | Privacy statement | Accessibility |