Flu home Database Genome Set Alignment Tree BLAST Annotation FTP Help Contact us NIAID Influenza Genome Sequencing Project Data Releasing Status Status Complete set Virus Species Sample provider Country Subtype Host From year To year Released complete partial all any Influenzavirus A Influenzavirus B any Adelaide Alaska Argentina Australian Animal Health Laboratory BCM Baylor Baylor_WKS Berkeley Boston CDC CDPH CLEVB CSIRO Chang Gung Egypt Erasmus HKU Hong Kong Innovative Biotech Italy Long Island Lovelace Respiratory Research Institute Medical College of Wisconsin Mexico Mexico, Pandemic 2009 Mount Sinai NIAID NIGSP-DW NIGSP-NIAID NYMC NYSDOH NYSDOH-WA NYSDOH-WP Naval Health Research Center New Zealand OSU OSU, archived Perth Pittsburgh Prince of Wales Hospital Queensland SDI SJ-CEIRS Saskatchewan St Jude The Methodist Hospital UC Berkeley UC Davis USAF USGS University of Georgia University of Ottawa University of Siena Wadsworth-DW09 Wadsworth-SW Wadsworth_SGS any SELECT value FROM Influenza..Sample WHERE name='Country' group by value Afghanistan Algeria Argentina Australia Austria Bangladesh Belgium Bolivia Brazil Bulgaria Canada Chile China China: Fujian China: Guangxi China: Hunan China: Shantou China: Yunnan Colombia Cote d'Ivoire Croatia Czech Republic Denmark Dominican Republic Ecuador Egypt El Salvador France Germany Guam Guatemala Honduras Hong Kong Hungary India Iran Iraq Israel Italy Japan Kenya Kosovo Kuwait Kyrgyzstan Laos Lebanon Macau Malaysia Mexico Mongolia Nepal Netherlands New Caledonia New Zealand Nicaragua Niger Nigeria Northern Mariana Islands Norway Pakistan Panama Papua New Guinea Paraguay Peru Philippines Portugal Puerto Rico Qatar Romania Russia Saudi Arabia Singapore Slovenia Solomon Islands South Africa South Korea Spain Sri Lanka Sudan Sweden Switzerland Taiwan Thailand Tonga USA United Kingdom Uruguay Uzbekistan Venezuela Viet Nam any SELECT value FROM Influenza..Sample WHERE name='Subtype' group by value H1 H10 H10N1 H10N2 H10N3 H10N4 H10N6 H10N7 H10N8 H10N9 H11 H11N1 H11N2 H11N3 H11N5 H11N6 H11N7 H11N8 H11N9 H12 H12N4 H12N5 H12N6 H12N7 H12N8 H12N9 H13N6 H13N9 H15 H15N6 H15N9 H16N3 H1N1 H1N2 H1N3 H1N4 H1N5 H1N6 H1N7 H1N9 H2 H2N1 H2N2 H2N3 H2N6 H2N7 H2N9 H3 H3N H3N1 H3N2 H3N3 H3N4 H3N5 H3N6 H3N7 H3N8 H4 H4N1 H4N2 H4N3 H4N4 H4N4,8 H4N5 H4N6 H4N7 H4N8 H4N9 H5 H5N1 H5N2 H5N3 H5N5 H5N7 H5N8 H5N9 H6 H6N1 H6N2 H6N4 H6N5 H6N6 H6N8 H7 H7N1 H7N2 H7N3 H7N3,8 H7N4 H7N5 H7N6 H7N7 H7N8 H7N9 H8 H8N1 H8N3 H8N4 H9 H9N1 H9N2 H9N3 H9N5 H9N9 H?N2 H?N? HN Mixed N1 N2 N8 mixed any Avian SELECT value FROM Influenza..Sample WHERE name='Host' group by value American Black Duck American Wigeon American black duck American coot American green-winged Teal American green-winged teal American widgeon American wigeon Australian shelduck Avian Barnacle Goose Bewick's Swan Black Duck Black kite Black-headed Gull Blue-Winged Teal Blue-winged Teal Blue-winged teal Bufflehead Cackling goose California gull Canada Goose Chestnut teal Chicken Chicken (Breeder) Chicken (Broilers) Chicken (Layer) Chukar Common Eider Common Scoter Common Teal Cygnus Cygnus Cygnus Olor Daurian starling Duck Dunlin Emu Environment Equine Eurasian Coot Eurasian Wigeon Gadwall Goose Gray teal Green-winged Teal Green-winged teal Guinea Fowl Guinea fowl Gull Herring Gull Human Japanese white-eye Laughing gull Least sandpiper Lesser Noddy Longtail Duck Mallard Muscovy Duck Muscovy duck Mute Swan Northern Pintail Northern Shoveler Northern pintail Northern shoveler Ostrich Pacific Black duck Pacific black duck Packfic Black duck Pekin Duck Pheasant Pigeon Pink-footed Goose Pintail Poultry Quail Red-necked Stint Red-necked stint Redhead Ring-necked Duck Ring-necked duck Ruddy turnstone Sanderling Sharp-tailed Sandpiper Shearwater Shorebird Shoveler Silver gull Snow Goose Snow goose Sooty Tern Starling Swan Swine Swine, Human Teal Tern Turkey Turnstone Unknown Wedge-tailed Shearwater Wedge-tailed shearwater Whiskered tern White-winged Scoter Wigeon Wood Duck avian bald eagle black duck black-crowned night heron blue magpie blue-winged teal breeder duck bufflehead chestnut munia chicken chuckar chukar chukkar cinnamon teal common buzzard common kestrel common magpie common murre crested goshawk crow double-crested cormorant duck environment falcon ferret gadwall gadwall duck garganey goose great egret greater white fronted goose greater white-fronted goose green winged teal green-winged teal grey heron guinea fowl house crow human laughing gull least sandpiper little egret long-tailed shrike magpie robin mallard mallard duck muscovy duck mute swan northern pintail northern shoveler ostrich partridge peacock peregrine falcon pheasant pigeon pintail quail red knot red-billed starling redheaded duck ring necked duck ring-necked duck rock dove ruddy turnstone sanderling scaly-breasted munia silky chicken silver-eared mesia swine teal turkey unknown water fowl waterfowl western grebe white-backed munia wild duck wood duck Sample provider All subtypes Subtype breakdowns H3N2 H1N1 H1N2 Other Released + Partial To come All Released + Partial To come All Released + Partial To come All Released + Partial To come All Released + Partial To come All Adelaide 46 2000-2005 5 2000-2005 51 29 2000-2005 2 2000-2005 31 17 2000-2005 3 2000-2000 20 0 0 0 0 0 0 Alaska 22 2007-2007 29 2007-2007 51 0 0 0 0 3 2007-2007 3 0 0 0 22 2007-2007 26 2007-2007 48 Argentina 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 Australian Animal Health Laboratory 23 2004-2005 9 2004-2005 32 0 0 0 0 0 0 0 0 0 23 2004-2005 9 2004-2005 32 BCM 4 1994-2007 3 1995-2007 7 2 1997-2007 1 1995-1995 3 0 2 2006-2007 2 0 0 0 2 1994-2004 0 2 Baylor 48 1997-2005 0 48 0 0 0 0 0 0 0 0 0 48 1997-2005 0 48 Baylor_WKS 3 2009-2009 46 2009-2009 49 0 0 0 3 2009-2009 46 2009-2009 49 0 0 0 0 0 0 Berkeley 78 2007-2008 47 2007-2008 125 36 2007-2007 2 2007-2007 38 37 2008-2008 37 2008-2008 74 0 0 0 5 2008-2008 8 2007-2008 13 Boston 55 2008-2008 42 2008-2008 97 48 2008-2008 19 2008-2008 67 7 2008-2008 17 2008-2008 24 0 0 0 0 6 2008-2008 6 CDC 100 1987-2006 1 1999-1999 101 0 0 0 0 0 0 0 0 0 100 1987-2006 1 1999-1999 101 CDPH 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 CLEVB 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 CSIRO 34 1975-2007 76 1972-2007 110 0 0 0 0 0 0 0 0 0 34 1975-2007 76 1972-2007 110 Chang Gung 47 1999-2008 64 2001-2008 111 8 2004-2008 3 2005-2006 11 9 1999-2008 4 2005-2007 13 0 0 0 30 2001-2007 57 2001-2008 87 Egypt 5 2004-2008 15 2005-2008 20 0 0 0 0 0 0 0 0 0 5 2004-2008 15 2005-2008 20 Erasmus 28 2004-2007 22 2000-2007 50 1 2007-2007 0 1 0 0 0 0 0 0 27 2004-2007 22 2000-2007 49 HKU 72 2004-2005 7 2004-2005 79 72 2004-2005 7 2004-2005 79 0 0 0 0 0 0 0 0 0 Hong Kong 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 Innovative Biotech 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 Italy 117 1980-2006 46 1997-2006 163 0 0 0 0 0 0 0 0 0 117 1980-2006 46 1997-2006 163 Long Island 97 1998-2005 2 2002-2005 99 74 1998-2005 0 74 15 2001-2003 1 2002-2002 16 8 2002-2003 0 8 0 1 2005-2005 1 Lovelace Respiratory Research Institute 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 Medical College of Wisconsin 184 2009-2009 21 2009-2009 205 0 0 0 184 2009-2009 21 2009-2009 205 0 0 0 0 0 0 Mexico 2 2003-2003 37 1999-2004 39 2 2003-2003 37 1999-2004 39 0 0 0 0 0 0 0 0 0 Mexico, Pandemic 2009 16 2009-2009 2 2009-2009 18 0 0 0 16 2009-2009 2 2009-2009 18 0 0 0 0 0 0 Mount Sinai 11 1942-2004 1 2003-2003 12 4 2001-2004 0 4 7 1942-2004 1 2003-2003 8 0 0 0 0 0 0 NIAID 12 1931-1976 1 1935-1935 13 5 1968-1973 0 5 7 1931-1976 1 1935-1935 8 0 0 0 0 0 0 NIGSP-DW 173 1982-2006 66 1966-2006 239 0 0 0 1 2005-2005 12 2005-2006 13 0 0 0 172 1982-2006 54 1966-2006 226 NIGSP-NIAID 3 1934-1934 13 1934-1934 16 0 0 0 3 1934-1934 13 1934-1934 16 0 0 0 0 0 0 NYMC 48 1933-2007 48 1934-2007 96 19 1968-2007 34 1968-2007 53 13 1933-2006 6 1934-1999 19 1 1957-1957 0 1 15 1957-2006 8 1940-2006 23 NYSDOH 693 + 1 1993-2005 10 1999-2004 704 612 + 1 1993-2005 6 1999-2004 619 66 1995-2003 0 66 14 2002-2003 4 2003-2003 18 1 1999-1999 0 1 NYSDOH-WA 46 1948-1979 3 1957-1967 49 19 1968-1978 0 19 8 1948-1979 0 8 0 0 0 19 1957-1968 3 1957-1967 22 NYSDOH-WP 42 2004-2006 1 2004-2004 43 42 2004-2006 1 2004-2004 43 0 0 0 0 0 0 0 0 0 Naval Health Research Center 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 New Zealand 592 1999-2005 29 2000-2005 621 444 1999-2005 19 2000-2005 463 147 2000-2005 10 2000-2001 157 0 0 0 1 2000-2000 0 1 OSU 180 1986-2006 95 1986-2007 275 13 1986-2005 3 2005-2006 16 10 1987-2005 0 10 0 0 0 157 1986-2006 92 1986-2007 249 OSU, archived 0 32 1986-2006 32 0 0 0 0 0 0 0 0 0 0 32 1986-2006 32 Perth 77 2000-2005 2 2000-2002 79 71 2000-2005 2 2000-2002 73 6 2001-2005 0 6 0 0 0 0 0 0 Pittsburgh 18 2008-2008 57 2008-2008 75 15 2008-2008 3 2008-2008 18 0 0 0 0 0 0 3 2008-2008 54 2008-2008 57 Prince of Wales Hospital 28 1999-2000 0 28 24 1999-2000 0 24 4 1999-2000 0 4 0 0 0 0 0 0 Queensland 56 2000-2005 0 56 56 2000-2005 0 56 0 0 0 0 0 0 0 0 0 SDI 516 2002-2008 105 2004-2008 621 156 2002-2008 19 2007-2008 175 312 2006-2008 49 2007-2008 361 1 2003-2003 0 1 47 2006-2007 37 2004-2008 84 SJ-CEIRS 13 2006-2007 12 2006-2007 25 0 0 0 3 2006-2006 0 3 0 0 0 10 2006-2007 12 2006-2007 22 Saskatchewan 37 2005-2007 160 2005-2007 197 7 2006-2007 12 2005-2007 19 0 2 2005-2006 2 0 0 0 30 2005-2007 146 2005-2007 176 St Jude 409 1933-2007 59 1956-2006 468 96 1968-2003 9 1973-1990 105 218 1933-2003 26 1968-1990 244 0 0 0 95 1957-2007 24 1956-2006 119 The Methodist Hospital 11 2009-2009 95 2009-2009 106 0 0 0 11 2009-2009 95 2009-2009 106 0 0 0 0 0 0 UC Berkeley 0 41 2009-2009 41 0 0 0 0 41 2009-2009 41 0 0 0 0 0 0 UC Davis 4 2005-2005 19 2005-2007 23 0 0 0 0 0 0 0 0 0 4 2005-2005 19 2005-2007 23 USAF 8 2007-2008 2 2008-2008 10 4 2007-2008 1 2008-2008 5 4 2007-2008 1 2008-2008 5 0 0 0 0 0 0 USGS 3 2006-2007 114 2005-2007 117 0 0 0 0 0 0 0 3 2007-2007 3 3 2006-2007 111 2005-2007 114 University of Georgia 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 University of Ottawa 71 1931-1968 21 1933-1982 92 51 1968-1968 5 1968-1982 56 8 1931-1947 2 1933-1947 10 0 0 0 12 1956-1963 14 1956-1979 26 University of Siena 15 1987-2003 16 1988-2006 31 11 1988-2003 5 1988-2004 16 4 1987-1995 5 2001-2006 9 0 0 0 0 6 1993-2006 6 Wadsworth-DW09 49 2009-2009 30 2009-2009 79 41 2009-2009 28 2009-2009 69 8 2009-2009 2 2009-2009 10 0 0 0 0 0 0 Wadsworth-SW 228 1976-2009 30 2009-2009 258 0 0 0 228 1976-2009 30 2009-2009 258 0 0 0 0 0 0 Wadsworth_SGS 0 36 2009-2009 36 0 0 0 0 36 2009-2009 36 0 0 0 0 0 0 Total 4324+1 1572 5897 1962+1 218 2181 1356 468 1824 24 7 31 982 879 1861 November 25, 2009   | 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