Linepithema humile (Argentine ant)
Representative genome: Linepithema humile (assembly Lhum_UMD_V04)
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ID: 2733
Organism ImageLinepithema humile (Argentine ant)

Linepithema humile overview

Lineage: Eukaryota[1567]; Metazoa[623]; Ecdysozoa[289]; Arthropoda[218]; Hexapoda[180]; Insecta[179]; Pterygota[179]; Neoptera[177]; Endopterygota[158]; Hymenoptera[33]; Apocrita[29]; Aculeata[20]; Vespoidea[12]; Formicidae[12]; Dolichoderinae[1]; Linepithema[1]; Linepithema humile[1]
Argentine ants are invasive species in Mediterranean climates worldwide, where they decimate local arthropod populations and protect agricultural pests including aphids, scale insects, and mealybugs. Control of Argentine ants and the pests they protect results in significant pesticide use that affects watershed biodiversity and potentially human health.

Summary

Submitter: The Ant Genomics Consortium
Definition: The Linepithema humile genome was sequenced using 454 and Illumina sequencing technologies. Unpaired 454 sequencing reads were generated using genomic DNA from a single queen pupae, and additional paired-end 454 and Illumina sequencing reads were generated from 3kb and 8kb libraries constructed from the whole-body genomic DNA of 100 adult workers. The queens and workers were both obtained from the genetically bottlenecked California supercolony located in an orchard in Santa Clara county, California (N 37 deg. 15' 23.5", W 122 deg. 00' 55.2")
Assembly level: Scaffold
Assembly: GCA_000217595.1 Lhum_UMD_V04 scaffolds: 3,030 contigs: 18,227 N50: 35,858 L50: 1,697
BioProjects: PRJNA281950, PRJNA45799
Whole Genome Shotgun (WGS): INSDC: ADOQ00000000.1
Statistics: total length (Mb): 219.501
 protein count: 21674
 GC%: 37.9

Genome Assembly Annotation

Loc Type Name RefSeq INSDC Size (Mb) GC% Protein tRNA Other RNA Gene Pseudogene
master WGS-ADOQ00000000.1215.1437.7-----


Other BioProjects

Transcriptome or Gene expression2

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