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UniSTS:77293 Links
D7S2749
Homo sapiens chromosome 7, loci SBDS and SBDSP
Pan troglodytes chromosome 7, loci LOC741794 and SBDS

Found by e-PCR in sequences from Homo sapiens, Pan troglodytes and Pongo abelii.

Primer InformationHelp

Forward primer:TTATGGCAGCATGTTCAACG
Reverse primer:ATGGAACTTGTGTTCTGAGGG
PCR product size:132 (bp), Homo sapiens
GenBank Accession:G11487 T55337

   Homo sapiens
Name: D7S2749
Also known as: GDB:675778 GDB:676696 SHGC-13863
Polymorphism info:  

Cross References Help
Gene GeneID:155370
 Symbol:SBDSP
 Description:Shwachman-Bodian-Diamond syndrome pseudogene
 Position:7q11.23
Gene GeneID:51119
 Symbol:SBDS
 Description:Shwachman-Bodian-Diamond syndrome
 Position:7q11.21
UniGeneHs.110445 Shwachman-Bodian-Diamond syndrome
 Hs.585053 Transcribed locus, strongly similar to NP_057122.2 Shwachman-Bodian-Diamond ...

Mapping InformationHelp
D7S2749 Sequence Map: Chr 7|HuRef Map Viewer
  Position: 62635886-62636013 (bp)
 
D7S2749 Sequence Map: Chr 7|Celera Map Viewer
  Position: 65663275-65663402 (bp)
 
D7S2749 Sequence Map: Chr 7|CRA_TCAGchr7v2 Map Viewer
  Position: 65790369-65790496 (bp)
 
D7S2749 Sequence Map: Chr 7 Map Viewer
  Position: 66452807-66452934 (bp)
 
D7S2749 Sequence Map: Chr 7|HuRef Map Viewer
  Position: 68475829-68475960 (bp)
 
D7S2749 Sequence Map: Chr 7|Celera Map Viewer
  Position: 69784626-69784757 (bp)
 
D7S2749 Sequence Map: Chr 7|CRA_TCAGchr7v2 Map Viewer
  Position: 71640526-71640657 (bp)
 
D7S2749 Sequence Map: Chr 7 Map Viewer
  Position: 72307704-72307835 (bp)
 
SHGC-13863 NCBI RH Map: Chr 7 Map Viewer
  Position: 853.5 (cR)
  Lod score: 1.34
 
SHGC-13863 Stanford-G3 Map: Chr 7 Map Viewer
  Position: 3284 (cR10000)
  Lod score: F
  Reference Interval: 72
 
SHGC-13863 GeneMap99-G3 Map: Chr 7 Map Viewer
  Position: 3284 (cR10000)
  Lod score: F
  Reference Interval: D7S645-D7S2415

Electronic PCR results Help
RefSeq mRNA (1)
NM_016038.2 1361 .. 1488 (128 bp)  
 
mRNA (3)
AK001779.1 1360 .. 1487 (128 bp)  
AY169963.1 1361 .. 1488 (128 bp)  
BC065700.1 1331 .. 1458 (128 bp)  
 
Genomic RefSeqs (5 of 17)[Show All Hits]
NW_923417.1 5640804 .. 5640931 (128 bp)  
NW_923462.1 103814 .. 103945 (132 bp)  
NT_079593.2 4485617 .. 4485744 (128 bp)  
NT_079593.2 10335774 .. 10335905 (132 bp)  
AC_000050.1 65663275 .. 65663402 (128 bp)  
 
Genomic (5 of 11)[Show All Hits]
G11487.1 119 .. 250 (132 bp)  
AC005236.4 62355 .. 62486 (132 bp)  
AC079920.6 51378 .. 51505 (128 bp)  
BV202008.1 7 .. 138 (132 bp)  
AC208947.3 13043 .. 13174 (132 bp)  
 
Working Draft phase 1 (from GenBank HTGS division) (4)
AC204989.3 204567 .. 204698 (132 bp)  
AC211482.3 222549 .. 222680 (132 bp)  
AC211506.3 209974 .. 210105 (132 bp)  
AC211426.3 132201 .. 132332 (132 bp)  
 
ESTs (5 of 168)[Show All Hits]
T55337.1 119 .. 250 (132 bp)  
R19215.1 120 .. 247 (128 bp)  
U56654.1 34 .. 161 (128 bp)  
AA025525.1 132 .. 259 (128 bp)  
AA028934.1 118 .. 245 (128 bp)  
 
Whole Genome Shotgun sequences (5 of 10)[Show All Hits]
AADD01082184.1 1306 .. 1437 (132 bp)  
AADD01081607.1 6486 .. 6613 (128 bp)  
AADC01069123.1 10299 .. 10430 (132 bp)  
AACC02000112.1 130081 .. 130208 (128 bp)  
AADB02010653.1 3310 .. 3441 (132 bp)  
 
Patent sequences (5 of 12)[Show All Hits]
BD079800.1 1279 .. 1406 (128 bp)  
BD154038.1 118 .. 245 (128 bp)  
BD156702.1 1360 .. 1487 (128 bp)  
AX873976.1 118 .. 245 (128 bp)  
AX877524.1 1360 .. 1487 (128 bp)  
 
Other sequences (2)
NR_024110.1 1444 .. 1575 (132 bp)  
NR_024111.1 1322 .. 1453 (132 bp)  
 
High Thoughput cDNA sequences (5 of 22)[Show All Hits]
CR591576.1 1332 .. 1459 (128 bp)  
CR593490.1 904 .. 1031 (128 bp)  
CR596032.1 1347 .. 1474 (128 bp)  
CR597378.1 1275 .. 1402 (128 bp)  
CR599716.1 1509 .. 1640 (132 bp)  
 

   Pan troglodytes
Name: D7S2749
Polymorphism info:  

Cross References Help
Gene GeneID:463942
 Symbol:SBDS
 Description:Shwachman-Bodian-Diamond syndrome
 Position: 
Gene GeneID:741794
 Symbol:LOC741794
 Description:hypothetical protein LOC741794
 Position: 

Mapping InformationHelp
D7S2749 Sequence Map: Chr 7 Map Viewer
  Position: 66632855-66632982 (bp)
 
D7S2749 Sequence Map: Chr 7 Map Viewer
  Position: 72720220-72720351 (bp)

Electronic PCR results Help
RefSeq mRNA (4)
XM_001141579.1 1453 .. 1580 (128 bp)  
XM_519568.2 1406 .. 1533 (128 bp)  
XM_001141242.1 1406 .. 1533 (128 bp)  
XR_020462.1 1400 .. 1531 (132 bp)  
 
Genomic RefSeqs (2)
NW_001238020.1 1305696 .. 1305823 (128 bp)  
NW_001238041.1 30923 .. 31054 (132 bp)  
 
Genomic (3)
AC173999.3 84185 .. 84316 (132 bp)  
AC190222.1 80806 .. 80937 (132 bp)  
AC193200.4 64111 .. 64238 (128 bp)  
 
Whole Genome Shotgun sequences (3)
AADA01313147.1 8110 .. 8237 (128 bp)  
AACZ02084571.1 6121 .. 6252 (132 bp)  
AACZ02084051.1 1269 .. 1396 (128 bp)  
 

   Pongo abelii
 
Polymorphism info:  

Electronic PCR results Help
RefSeq mRNA (1)
NM_001132146.1 1343 .. 1474 (132 bp)  
 
Genomic (1)
AC206529.4 98988 .. 99119 (132 bp)  
 
High Thoughput cDNA sequences (1)
CR858869.1 1343 .. 1474 (132 bp)  
 

 

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