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UniSTS:74895 Links
D7S820
Homo sapiens chromosome 7, loci AASTH5, EN2, and SEMA3A, polymorphic
Pan troglodytes chromosome 7, locus SEMA3A

Found by e-PCR in sequences from Homo sapiens and Pan troglodytes.

Primer InformationHelp

Forward primer:TGTCATAGTTTAGAACGAACTAACG
Reverse primer:CTGAGGTATCAAAAACTCAGAGG
PCR product size:204-240 (bp), Homo sapiens
GenBank Accession:G08616

   Homo sapiens
Name: D7S820
Also known as: CHLC.511 CHLC.GATA3F01 CHLC.GATA3F01.511 CHLC.GATA3F01.P6579 GATA-D7S820 GATA3F01 GDB:686604
Polymorphism info: on genetic map

Cross References Help
Gene GeneID:10371
 Symbol:SEMA3A
 Description:sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A
 Position:7p12.1
Gene GeneID:2020
 Symbol:EN2
 Description:engrailed homeobox 2
 Position:7q36
Gene GeneID:544434
 Symbol:AASTH5
 Description:Allergic/atopic asthma related QTL 5
 Position: 

Mapping InformationHelp
D7S820 Sequence Map: Chr 7|HuRef Map Viewer
  Position: 78397881-78398094 (bp)
 
D7S820 Sequence Map: Chr 7|Celera Map Viewer
  Position: 78490409-78490626 (bp)
 
D7S820 Sequence Map: Chr 7|CRA_TCAGchr7v2 Map Viewer
  Position: 83121191-83121408 (bp)
 
D7S820 Sequence Map: Chr 7 Map Viewer
  Position: 83789392-83789617 (bp)
 
D7S820 deCODE Map: Chr 7 Map Viewer
  Position: 97.88 (cM)
 
GATA3F01 Marshfield Map: Chr 7 Map Viewer
  Position: 98.44 (cM)
 
CHLC.GATA3F01.511 Whitehead-YAC Map: Chr 7 Map Viewer
  Position: 301 (ordinal)
  Reference Interval: WC7.5

Electronic PCR results Help
Genomic RefSeqs (5 of 9)[Show All Hits]
NW_923574.1 7029446 .. 7029663 (218 bp)  
NT_079595.2 9022403 .. 9022620 (218 bp)  
AC_000050.1 78490409 .. 78490626 (218 bp)  
AC_000068.1 83121191 .. 83121408 (218 bp)  
AC_000139.1 78397881 .. 78398094 (214 bp)  
 
Genomic (4)
G08616.1 102 .. 323 (222 bp)  
G20012.1 102 .. 323 (222 bp)  
AC004848.1 103727 .. 103952 (226 bp)  
AB130607.1 35 .. 260 (226 bp)  
 
Whole Genome Shotgun sequences (5 of 6)[Show All Hits]
AADD01083014.1 7499 .. 7716 (218 bp)  
AADC01069513.1 103090 .. 103307 (218 bp)  
AACC02000015.1 7454001 .. 7454218 (218 bp)  
AADB02010674.1 222596 .. 222813 (218 bp)  
ABBA01045900.1 5763 .. 5976 (214 bp)  
 
Patent sequences (2)
DJ460028.1 35 .. 260 (226 bp)  
DJ460029.1 1 .. 226 (226 bp)  
 

   Pan troglodytes
Name: D7S820
Polymorphism info:  

Cross References Help
Gene GeneID:745878
 Symbol:SEMA3A
 Description:sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A
 Position: 

Mapping InformationHelp
D7S820 Sequence Map: Chr 7 Map Viewer
  Position: 83670563-83670771 (bp)

Electronic PCR results Help
Genomic RefSeqs (1)
NW_001238075.1 7263375 .. 7263583 (209 bp)  
 
Genomic (2)
AC187632.2 26637 .. 26852 (216 bp)  
AC192764.3 95271 .. 95479 (209 bp)  
 
Whole Genome Shotgun sequences (2)
AADA01176762.1 11661 .. 11876 (216 bp)  
AACZ02085472.1 20640 .. 20848 (209 bp)  
 

 

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