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UniSTS:70864 Links
SHGC-56008
Homo sapiens chromosome 7, locus SCRN1
Pan troglodytes chromosome 7, locus SCRN1

Found by e-PCR in sequences from Homo sapiens, Pan troglodytes, Papio anubis and Pongo abelii.

Primer InformationHelp

Forward primer:TGATGCATTTAGAGACAATTCCA
Reverse primer:GAAAATCATTCTGTTGCCTGC
PCR product size:127 (bp), Homo sapiens
GenBank Accession:G23766 T15902

   Homo sapiens
Name: SHGC-56008
Also known as: EST41622 WI-15334
Polymorphism info:  

Cross References Help
Gene GeneID:9805
 Symbol:SCRN1
 Description:secernin 1
 Position:7p14.3-p14.1
UniGeneHs.520740 Secernin 1
 Hs.601501 Transcribed locus

Mapping InformationHelp
SHGC-56008 Sequence Map: Chr 7|HuRef Map Viewer
  Position: 29841437-29841563 (bp)
 
SHGC-56008 Sequence Map: Chr 7|Celera Map Viewer
  Position: 29949141-29949267 (bp)
 
SHGC-56008 Sequence Map: Chr 7 Map Viewer
  Position: 29959753-29959879 (bp)
 
SHGC-56008 Sequence Map: Chr 7|CRA_TCAGchr7v2 Map Viewer
  Position: 30009576-30009702 (bp)
 
WI-15334 Whitehead-RH Map: Chr 7 Map Viewer
  Position: 89.5 (cR3000)
  Lod score: P0.12
 
WI-15334 GeneMap99-GB4 Map: Chr 7 Map Viewer
  Position: 138.24 (cR3000)
  Lod score: 0.14
  Reference Interval: D7S529-D7S484

Electronic PCR results Help
RefSeq mRNA (4)
NM_014766.4 5108 .. 5234 (127 bp)  
NM_001145514.1 5048 .. 5174 (127 bp)  
NM_001145515.1 4948 .. 5074 (127 bp)  
NM_001145513.1 5116 .. 5242 (127 bp)  
 
mRNA (3)
G31727.1 27 .. 153 (127 bp)  
D83777.2 5051 .. 5177 (127 bp)  
BC040492.1 5060 .. 5186 (127 bp)  
 
Genomic RefSeqs (5 of 8)[Show All Hits]
NW_923240.1 23120006 .. 23120132 (127 bp)  
NT_079592.2 29959576 .. 29959702 (127 bp)  
AC_000050.1 29949141 .. 29949267 (127 bp)  
AC_000068.1 30009576 .. 30009702 (127 bp)  
NW_001839003.1 23684662 .. 23684788 (127 bp)  
 
Genomic (2)
G23766.1 27 .. 153 (127 bp)  
AC004912.2 115611 .. 115737 (127 bp)  
 
ESTs (5 of 106)[Show All Hits]
T03756.1 27 .. 153 (127 bp)  
T15902.1 27 .. 153 (127 bp)  
T15989.1 27 .. 153 (127 bp)  
T33340.1 27 .. 153 (127 bp)  
N24779.1 27 .. 153 (127 bp)  
 
Whole Genome Shotgun sequences (5 of 6)[Show All Hits]
AADD01079720.1 34611 .. 34737 (127 bp)  
AADC01067024.1 131306 .. 131432 (127 bp)  
AACC02000087.1 2744702 .. 2744828 (127 bp)  
AADB02010433.1 2154791 .. 2154917 (127 bp)  
ABBA01056806.1 35833 .. 35959 (127 bp)  
 
Patent sequences (4)
BD186742.1 5 .. 131 (127 bp)  
CS351463.1 5051 .. 5177 (127 bp)  
CS609649.1 5 .. 131 (127 bp)  
DM165976.1 5060 .. 5186 (127 bp)  
 

   Pan troglodytes
Name: SHGC-56008
Polymorphism info:  

Cross References Help
Gene GeneID:463323
 Symbol:SCRN1
 Description:secernin 1
 Position: 

Mapping InformationHelp
SHGC-56008 Sequence Map: Chr 7 Map Viewer
  Position: 30287273-30287399 (bp)

Electronic PCR results Help
RefSeq mRNA (1)
XM_519021.2 5059 .. 5185 (127 bp)  
 
Genomic RefSeqs (1)
NW_001237933.1 23402087 .. 23402213 (127 bp)  
 
Genomic (1)
AC187736.3 168069 .. 168195 (127 bp)  
 
Working Draft phase 1 (from GenBank HTGS division) (1)
AC146158.1 158009 .. 158135 (127 bp)  
 
Working Draft phase 2 (from GenBank HTGS division) (2)
AC091622.2 37015 .. 37141 (127 bp)  
AC094110.2 116038 .. 116164 (127 bp)  
 
Whole Genome Shotgun sequences (2)
AADA01257094.1 4198 .. 4324 (127 bp)  
AACZ02082051.1 71874 .. 72000 (127 bp)  
 

   Papio anubis
 
Polymorphism info:  

Electronic PCR results Help
Genomic (2)
AC091713.4 211672 .. 211798 (127 bp)  
AC097004.3 78540 .. 78666 (127 bp)  
 
ESTs (1)
GE843679.1 101 .. 227 (127 bp)  
 

   Pongo abelii
 
Polymorphism info:  

Electronic PCR results Help
Whole Genome Shotgun sequences (1)
ABGA01275414.1 16059 .. 16185 (127 bp)  
 

 

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