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UniSTS:58809 Links D1S1656 Homo sapiens chromosome 1, loci RGS4 and CAPN9, polymorphic Macaca mulatta chromosome 1, locus CAPN9 Pan troglodytes chromosome 1, locus CAPN9 Found by e-PCR in sequences from Homo sapiens, Macaca mulatta, Pan troglodytes and Pongo abelii. Primer Information Forward primer: GTGTTGCTCAAGGGTCAACT Reverse primer: GAGAAATAGAATCACTAGGGAACC PCR product size: 130-161 (bp), Homo sapiens GenBank Accession: G07820    Homo sapiens Name: D1S1656 Also known as: CHLC.GATA44E05 CHLC.GATA44E05.P16122 G00-365-303 GATA-D1S1656 GATA44E05 GDB:684924 SHGC-17436 Polymorphism info: on genetic map Cross References Gene GeneID: 10753   Symbol: CAPN9   Description: calpain 9   Position: 1q42.11-q42.3 Gene GeneID: 5999   Symbol: RGS4   Description: regulator of G-protein signaling 4   Position: 1q23.3 Mapping Information D1S1656 Sequence Map: Chr 1|HuRef Map Viewer   Position: 201390019-201390167 (bp)   D1S1656 Sequence Map: Chr 1|Celera Map Viewer   Position: 204171298-204171446 (bp)   D1S1656 Sequence Map: Chr 1 Map Viewer   Position: 230905305-230905457 (bp)   D1S1656 deCODE Map: Chr 1 Map Viewer   Position: 234.69 (cM)   GATA44E05 Marshfield Map: Chr 1 Map Viewer   Position: 245.05 (cM)   SHGC-17436 NCBI RH Map: Chr 1 Map Viewer   Position: 2036.9 (cR)   Lod score: 2.92   SHGC-17436 TNG Map: Chr 1 Map Viewer   Position: 116299 (cR50000)   Lod score: 8.2   Reference Interval: 288   SHGC-17436 Stanford-G3 Map: Chr 1 Map Viewer   Position: 9172 (cR10000)   Lod score: F   Reference Interval: 154   CHLC.GATA44E05 Whitehead-RH Map: Chr 1 Map Viewer   Position: 908.3 (cR3000)   Lod score: P0.01   CHLC.GATA44E05 Whitehead-YAC Map: Chr 1 Map Viewer   Position: 850 (ordinal)   Reference Interval: WC1.20 Electronic PCR results Genomic RefSeqs (5 of 6)[Show All Hits] NW_927128.1 6752468 .. 6752616 (149 bp)   AC_000044.1 204171298 .. 204171446 (149 bp)   NW_001838549.1 433589 .. 433737 (149 bp)   AC_000133.1 201390019 .. 201390167 (149 bp)   NT_167186.1 24423084 .. 24423236 (153 bp)     Genomic (5 of 7)[Show All Hits] G07820.1 54 .. 201 (148 bp)   G15722.1 61 .. 208 (148 bp)   G27286.1 43 .. 190 (148 bp)   AL591291.1 14205 .. 14357 (153 bp)   AY874864.1 23963 .. 24115 (153 bp)     Whole Genome Shotgun sequences (5) AADD01013525.1 4321 .. 4461 (141 bp)   AADC01011706.1 5701 .. 5841 (141 bp)   AADB02001218.1 437802 .. 437950 (149 bp)   ABBA01033029.1 17666 .. 17814 (149 bp)   ABSL01058513.1 17654 .. 17802 (149 bp)     Patent sequences (5 of 30)[Show All Hits] CQ926629.1 31776 .. 31924 (149 bp)   CQ926656.1 28147 .. 28295 (149 bp)   CQ926899.1 11 .. 159 (149 bp)   CQ926901.1 12 .. 160 (149 bp)   CQ926903.1 14 .. 162 (149 bp)        Macaca mulatta Name: D1S1656 Polymorphism info:   Cross References Gene GeneID: 719222   Symbol: CAPN9   Description: calpain 9   Position:   Mapping Information D1S1656 Sequence Map: Chr 1 Map Viewer   Position: 226188735-226188873 (bp)   D1S1656 RH Map: Chr 1 Map Viewer   Position: 73.8 (cR)   Lod score: 3.12 Electronic PCR results Genomic RefSeqs (1) NW_001109259.1 16027878 .. 16028016 (139 bp)     Whole Genome Shotgun sequences (1) AANU01168960.1 12021 .. 12159 (139 bp)        Pan troglodytes Name: D1S1656 Polymorphism info:   Cross References Gene GeneID: 457812   Symbol: CAPN9   Description: calpain 9   Position:   Mapping Information D1S1656 Sequence Map: Chr 1 Map Viewer   Position: 211373669-211373813 (bp) Electronic PCR results Genomic RefSeqs (1) NW_001229629.1 1642845 .. 1642989 (145 bp)     Whole Genome Shotgun sequences (2) AADA01097842.1 12922 .. 13058 (137 bp)   AACZ02013965.1 10672 .. 10816 (145 bp)        Pongo abelii   Polymorphism info:   Electronic PCR results Whole Genome Shotgun sequences (1) ABGA01357761.1 4499 .. 4621 (123 bp)

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