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UniSTS:45590 Links
D16S539
Homo sapiens chromosome 16, polymorphic
Pan troglodytes chromosome 16

Found by e-PCR in sequences from Homo sapiens, Pan troglodytes and Pongo abelii.

Primer InformationHelp

Forward primer:GATCCCAAGCTCTTCCTCTT
Reverse primer:ACGTTTGTGTGTGCATCTGT
PCR product size:148-172 (bp), Homo sapiens
GenBank Accession:G07925

   Homo sapiens
Name: D16S539
Also known as: CHLC.715 CHLC.GATA11C06 CHLC.GATA11C06.715 CHLC.GATA11C06.P6766 GATA-D16S539 GATA-P6766 GATA11C06 GDB:686448 SHGC-17627 SHGC-4544
Polymorphism info: on genetic map

Cross References Help

Mapping InformationHelp
D16S539 Sequence Map: Chr 16|Celera Map Viewer
  Position: 70689698-70689854 (bp)
 
D16S539 Sequence Map: Chr 16|HuRef Map Viewer
  Position: 72127195-72127355 (bp)
 
D16S539 Sequence Map: Chr 16 Map Viewer
  Position: 86386257-86386413 (bp)
 
GATA11C06 Marshfield Map: Chr 16 Map Viewer
  Position: 124.73 (cM)
 
SHGC-4544 TNG Map: Chr 16 Map Viewer
  Position: 39179 (cR50000)
  Lod score: 15.8
  Reference Interval: 105
 
CHLC.GATA11C06.715 NCBI RH Map: Chr 16 Map Viewer
  Position: 666.5 (cR)
  Lod score: 1.18
 
SHGC-17627 TNG Map: Chr 16 Map Viewer
  Position: 39179 (cR50000)
  Lod score: 15.8
  Reference Interval: 105
 
CHLC.GATA11C06.715 Whitehead-RH Map: Chr 16 Map Viewer
  Position: 336.2 (cR3000)
  Lod score: P1.47

Electronic PCR results Help
Genomic RefSeqs (5 of 6)[Show All Hits]
NT_010498.15 40000456 .. 40000612 (157 bp)  
NW_926528.1 11929612 .. 11929768 (157 bp)  
AC_000059.1 70689698 .. 70689854 (157 bp)  
NW_001838329.1 828638 .. 828798 (161 bp)  
AC_000148.1 72127195 .. 72127355 (161 bp)  
 
Genomic (4)
G07925.1 224 .. 380 (157 bp)  
AF249681.1 224 .. 380 (157 bp)  
AC024591.4 10681 .. 10837 (157 bp)  
AC092327.4 100897 .. 101053 (157 bp)  
 
Whole Genome Shotgun sequences (5 of 6)[Show All Hits]
AADD01150765.1 9763 .. 9923 (161 bp)  
AADC01153208.1 372 .. 520 (149 bp)  
AADC01127690.1 72932 .. 73092 (161 bp)  
AADB02017800.1 107421 .. 107577 (157 bp)  
ABBA01034296.1 75980 .. 76140 (161 bp)  
 
Patent sequences (2)
DJ470113.1 1 .. 157 (157 bp)  
HA638569.1 224 .. 380 (157 bp)  
 

   Pan troglodytes
Name: D16S539
Polymorphism info:  
Mapping InformationHelp
D16S539 Sequence Map: Chr 16 Map Viewer
  Position: 86669967-86670122 (bp)

Electronic PCR results Help
Genomic RefSeqs (1)
NW_001226063.1 868671 .. 868826 (156 bp)  
 
Whole Genome Shotgun sequences (2)
AADA01196175.1 27479 .. 27634 (156 bp)  
AACZ02165140.1 33042 .. 33197 (156 bp)  
 

   Pongo abelii
 
Polymorphism info:  

Electronic PCR results Help
Whole Genome Shotgun sequences (1)
ABGA01016160.1 30965 .. 31128 (164 bp)  
 

 

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