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UniSTS:29380 Links
RH46689
Homo sapiens chromosome 6, loci PHACTR1 and LOC100130357
Pan troglodytes chromosome 6, locus PHACTR1

Found by e-PCR in sequences from Homo sapiens, Pan troglodytes and Pongo abelii.

Primer InformationHelp

Forward primer:CCAAGAGGAGCCAGACTCC
Reverse primer:ACTTGGCCAAATGTACTGGC
PCR product size:176 (bp), Homo sapiens

   Homo sapiens
Name: RH46689
Also known as: stSG24742
Polymorphism info:  

Cross References Help
Gene GeneID:100130357
 Symbol:LOC100130357
 Description:similar to hCG2038897
 Position:6p24.1
Gene GeneID:221692
 Symbol:PHACTR1
 Description:phosphatase and actin regulator 1
 Position:6p24.1
UniGeneHs.436996 Phosphatase and actin regulator 1

Mapping InformationHelp
RH46689 Sequence Map: Chr 6|HuRef Map Viewer
  Position: 13224763-13224939 (bp)
 
RH46689 Sequence Map: Chr 6 Map Viewer
  Position: 13287767-13287943 (bp)
 
RH46689 Sequence Map: Chr 6|Celera Map Viewer
  Position: 14520740-14520916 (bp)
 
stSG24742 NCBI RH Map: Chr 6 Map Viewer
  Position: 113.6 (cR)
  Lod score: 1.30
 
stSG24742 GeneMap99-GB4 Map: Chr 6 Map Viewer
  Position: 47.84 (cR3000)
  Lod score: 0.42
  Reference Interval: D6S1640-D6S422

Electronic PCR results Help
Genomic RefSeqs (5 of 6)[Show All Hits]
NW_922984.1 12915996 .. 12916172 (177 bp)  
AC_000049.1 14520740 .. 14520916 (177 bp)  
NW_001838973.1 9569800 .. 9569976 (177 bp)  
AC_000138.1 13224763 .. 13224939 (177 bp)  
NT_007592.15 13227767 .. 13227943 (177 bp)  
 
Genomic (1)
AL008729.1 110415 .. 110591 (177 bp)  
 
Working Draft phase 1 (from GenBank HTGS division) (1)
AC051661.1 91228 .. 91404 (177 bp)  
 
ESTs (5 of 11)[Show All Hits]
H98750.1 125 .. 300 (176 bp)  
H98916.1 127 .. 302 (176 bp)  
AA713488.1 147 .. 323 (177 bp)  
AA809685.1 148 .. 324 (177 bp)  
AA971962.1 137 .. 313 (177 bp)  
 
Whole Genome Shotgun sequences (5 of 6)[Show All Hits]
AADD01067227.1 17612 .. 17788 (177 bp)  
AADC01058343.1 177677 .. 177853 (177 bp)  
AADB02347253.1 36 .. 212 (177 bp)  
AADB02009968.1 549601 .. 549777 (177 bp)  
ABBA01022125.1 26522 .. 26698 (177 bp)  
 
Patent sequences (2)
CQ861449.1 110415 .. 110591 (177 bp)  
CQ919775.1 291 .. 467 (177 bp)  
 

   Pan troglodytes
Name: RH46689
Polymorphism info:  

Cross References Help
Gene GeneID:462438
 Symbol:PHACTR1
 Description:phosphatase and actin regulator 1
 Position: 

Mapping InformationHelp
RH46689 Sequence Map: Chr 6 Map Viewer
  Position: 13508499-13508675 (bp)

Electronic PCR results Help
Genomic RefSeqs (1)
NW_001236512.1 9692370 .. 9692546 (177 bp)  
 
Whole Genome Shotgun sequences (1)
AACZ02069220.1 34680 .. 34856 (177 bp)  
 

   Pongo abelii
 
Polymorphism info:  

Electronic PCR results Help
Whole Genome Shotgun sequences (1)
ABGA01346201.1 23075 .. 23251 (177 bp)  
 

 

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