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Bos taurus
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UniSTS:15470 Links
WI-21009
Canis familiaris chromosome 4, loci NDST2 and LOC479251
Equus caballus chromosome 1, loci LOC100064113 and LOC100064078
Homo sapiens chromosome 10, loci NDST2, KIAA0913, and LOC100292807
Macaca mulatta chromosome 9, loci NDST2 and LOC706210
Pan troglodytes chromosome 10, loci LOC738171 and LOC450527

Found by e-PCR in sequences from Canis lupus, Equus caballus, Felis catus, Homo sapiens, Lama pacos, Macaca mulatta, Macaca nemestrina, Mus musculus, Pan troglodytes, Pongo abelii and Spermophilus tridecemlineatus.

Primer InformationHelp

Forward primer:AGGGTGTGAGACATCTTGGC
Reverse primer:TCCCTACAGAACCTCAAGCG
PCR product size:255 (bp), Homo sapiens
GenBank Accession:R44643

   Canis familiaris
Name: WI-21009
Polymorphism info:  

Cross References Help
Gene GeneID:479251
 Symbol:LOC479251
 Description:similar to CG32542-PA
 Position: 
Gene GeneID:489049
 Symbol:NDST2
 Description:N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2
 Position: 

Mapping InformationHelp
WI-21009 Sequence Map: Chr 4 Map Viewer
  Position: 27445192-27445445 (bp)

   Canis lupus
 
Polymorphism info:  

Electronic PCR results Help
RefSeq mRNA (4)
XM_857835.1 1278 .. 1531 (254 bp)  
XM_857862.1 1985 .. 2238 (254 bp)  
XM_536393.2 5346 .. 5599 (254 bp)  
XM_857906.1 3734 .. 3987 (254 bp)  
 
Genomic RefSeqs (1)
NW_876311.1 13951984 .. 13952237 (254 bp)  
 
ESTs (5 of 17)[Show All Hits]
CO595399.1 108 .. 361 (254 bp)  
CO599849.1 108 .. 361 (254 bp)  
CO601522.1 108 .. 361 (254 bp)  
CO605072.1 107 .. 360 (254 bp)  
CO632048.1 108 .. 361 (254 bp)  
 
Whole Genome Shotgun sequences (1)
AAEX02011740.1 152842 .. 153095 (254 bp)  
 

   Equus caballus
Name: WI-21009
Polymorphism info:  

Cross References Help
Gene GeneID:100064078
 Symbol:LOC100064078
 Description:hypothetical LOC100064078
 Position: 
Gene GeneID:100064113
 Symbol:LOC100064113
 Description:similar to heparan N-deacetylase/N-sulfotransferase-2
 Position: 

Mapping InformationHelp
WI-21009 Sequence Map: Chr 1 Map Viewer
  Position: 61460001-61460254 (bp)

Electronic PCR results Help
RefSeq mRNA (1)
XM_001918143.1 5472 .. 5725 (254 bp)  
 
Genomic RefSeqs (1)
NW_001867386.1 61460001 .. 61460254 (254 bp)  
 
Whole Genome Shotgun sequences (1)
AAWR02008188.1 45917 .. 46170 (254 bp)  
 

   Felis catus
 
Polymorphism info:  

Electronic PCR results Help
Whole Genome Shotgun sequences (2)
AANG01047578.1 1468 .. 1721 (254 bp)  
ACBE01369168.1 1639 .. 1892 (254 bp)  
 

   Homo sapiens
Name: WI-21009
Also known as: HSA.20990 STS-R44643
Polymorphism info:  

Cross References Help
Gene GeneID:100292807
 Symbol:LOC100292807
 Description:hypothetical protein LOC100292807
 Position: 
Gene GeneID:23053
 Symbol:KIAA0913
 Description:KIAA0913
 Position:10q22.2
Gene GeneID:8509
 Symbol:NDST2
 Description:N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2
 Position:10q22
UniGeneHs.65135 KIAA0913

Mapping InformationHelp
WI-21009 Sequence Map: Chr 10|Celera Map Viewer
  Position: 68844367-68844620 (bp)
 
WI-21009 Sequence Map: Chr 10|HuRef Map Viewer
  Position: 69556270-69556523 (bp)
 
WI-21009 Sequence Map: Chr 10 Map Viewer
  Position: 75561194-75561447 (bp)
 
WI-21009 Whitehead-RH Map: Chr 10 Map Viewer
  Position: 458.2 (cR3000)
  Lod score: P0.00
 
WI-21009 GeneMap99-GB4 Map: Chr 10 Map Viewer
  Position: 381.07 (cR3000)
  Lod score: 0.01
  Reference Interval: D10S188-D10S195

Electronic PCR results Help
RefSeq mRNA (1)
NM_015037.2 5478 .. 5731 (254 bp)  
 
mRNA (5 of 8)[Show All Hits]
AL133662.1 4128 .. 4381 (254 bp)  
AK023742.1 3255 .. 3508 (254 bp)  
BC036835.1 678 .. 931 (254 bp)  
BC040726.1 968 .. 1221 (254 bp)  
BC063694.1 611 .. 864 (254 bp)  
 
Genomic RefSeqs (5 of 6)[Show All Hits]
NW_924796.1 23038610 .. 23038863 (254 bp)  
AC_000053.1 68844367 .. 68844620 (254 bp)  
AC_000142.1 69556270 .. 69556523 (254 bp)  
NW_001837987.2 5899635 .. 5899888 (254 bp)  
NT_030059.13 26365658 .. 26365911 (254 bp)  
 
Genomic (1)
AC022400.9 134147 .. 134400 (254 bp)  
 
Working Draft phase 1 (from GenBank HTGS division) (1)
AC037447.2 153436 .. 153689 (254 bp)  
 
Working Draft phase 2 (from GenBank HTGS division) (1)
AL844520.8 139154 .. 139407 (254 bp)  
 
ESTs (5 of 67)[Show All Hits]
R05796.1 106 .. 361 (256 bp)  
R44022.1 114 .. 371 (258 bp)  
R44643.1 117 .. 371 (255 bp)  
AA443585.1 104 .. 357 (254 bp)  
AA548655.1 104 .. 357 (254 bp)  
 
Whole Genome Shotgun sequences (5)
AADD01108747.1 14207 .. 14460 (254 bp)  
AADC01092063.1 23112 .. 23365 (254 bp)  
AADB02013165.1 44254 .. 44507 (254 bp)  
ABBA01020308.1 60317 .. 60570 (254 bp)  
ABSL01048421.1 60317 .. 60570 (254 bp)  
 
Patent sequences (5 of 15)[Show All Hits]
AX333410.1 104 .. 357 (254 bp)  
AX408430.1 104 .. 357 (254 bp)  
BD155173.1 104 .. 357 (254 bp)  
BD160171.1 3255 .. 3508 (254 bp)  
AX875111.1 104 .. 357 (254 bp)  
 
High Thoughput cDNA sequences (3)
BC052780.1 4097 .. 4350 (254 bp)  
CR610954.1 1753 .. 2006 (254 bp)  
BC082763.1 118 .. 371 (254 bp)  
 

   Lama pacos
 
Polymorphism info:  

Electronic PCR results Help
Whole Genome Shotgun sequences (1)
ABRR01163825.1 1105 .. 1358 (254 bp)  
 

   Macaca mulatta
Name: WI-21009
Polymorphism info:  

Cross References Help
Gene GeneID:706210
 Symbol:LOC706210
 Description:similar to CG32542-PA
 Position: 
Gene GeneID:714578
 Symbol:NDST2
 Description:N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2
 Position: 
UniGeneMmu.2664 Similar to CG32542-PA

Mapping InformationHelp
WI-21009 Sequence Map: Chr 9 Map Viewer
  Position: 63218542-63218795 (bp)

Electronic PCR results Help
RefSeq mRNA (2)
XM_001099968.1 4295 .. 4548 (254 bp)  
XM_001099765.1 5724 .. 5977 (254 bp)  
 
Genomic RefSeqs (1)
NW_001124211.1 3835552 .. 3835805 (254 bp)  
 
Genomic (1)
AC190302.5 136075 .. 136328 (254 bp)  
 
Working Draft phase 1 (from GenBank HTGS division) (1)
AC190289.3 95264 .. 95517 (254 bp)  
 
Working Draft phase 2 (from GenBank HTGS division) (1)
AC190309.8 75306 .. 75559 (254 bp)  
 
ESTs (1)
CN805361.1 197 .. 450 (254 bp)  
 
Whole Genome Shotgun sequences (1)
AANU01283095.1 5773 .. 6026 (254 bp)  
 

   Macaca nemestrina
 
Polymorphism info:  

Electronic PCR results Help
ESTs (1)
DY755814.1 78 .. 331 (254 bp)  
 

   Mus musculus
 
Polymorphism info:  

Cross References Help
UniGeneMm.275082 RIKEN cDNA 2310021P13 gene


Electronic PCR results Help
ESTs (1)
AW476210.1 116 .. 369 (254 bp)  
 

   Pan troglodytes
Name: WI-21009
Polymorphism info:  

Cross References Help
Gene GeneID:450527
 Symbol:LOC450527
 Description:hypothetical LOC450527
 Position: 
Gene GeneID:738171
 Symbol:LOC738171
 Description:similar to heparan N-deacetylase/N-sulfotransferase-2
 Position: 

Mapping InformationHelp
WI-21009 Sequence Map: Chr 10 Map Viewer
  Position: 72999142-72999395 (bp)

Electronic PCR results Help
RefSeq mRNA (2)
XM_507850.2 5724 .. 5977 (254 bp)  
XM_001146127.1 4303 .. 4556 (254 bp)  
 
Genomic RefSeqs (1)
NW_001220701.1 64988 .. 65241 (254 bp)  
 
Whole Genome Shotgun sequences (2)
AADA01274691.1 1661 .. 1914 (254 bp)  
AACZ02115144.1 1646 .. 1899 (254 bp)  
 

   Pongo abelii
 
Polymorphism info:  

Electronic PCR results Help
Working Draft phase 1 (from GenBank HTGS division) (1)
AC221012.2 103649 .. 103902 (254 bp)  
 
Whole Genome Shotgun sequences (1)
ABGA01166336.1 42415 .. 42668 (254 bp)  
 

   Spermophilus tridecemlineatus
 
Polymorphism info:  

Electronic PCR results Help
Whole Genome Shotgun sequences (1)
AAQQ01664896.1 391 .. 644 (254 bp)  
 

 

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