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Mouse Genome Resources

Currently available mouse sequence based resources:

Mouse composite assembly based on MGSCv3 and HTGS phase 3 sequence

Mouse specific sequences available for BLAST:

  • curated NT contigs (non-redundant finished sequence)
  • HTGS sequence (phase 0,1,2&3 BACs)
  • MGSCv3 assembly supercontigs
  • Phusion and Arachne WGS contigs
  • All traces in the Trace Archive
  • mRNAs
  • Proteins
  • ESTs
  • BAC end sequence
Glossary of Commonly used Genome Terms
What's New...

20 May 2002 Annotation of Genes, STSs and variation on MGSCv3 and finished BACs
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9 April 2002 BLAST your sequence against assembled WGS data.
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8 March 2001 BLAST your sequence against the Whole Genome Shotgun Reads.
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6 July 2000. Blast your sequence against the Mouse Genome.
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1 Oct 1999. The NIH kicks off mouse genome sequencing by awarding grants to 10 centers for mapping and sequencing the mouse genome..
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 Feb 27, 2003
NCBI Build 30
 sequence data freeze:
    Jan. 27, 2003

 traces: 40795251
 phase 3 seqs: 4443
 supercontigs: 37,998
 length: 2.59 Mb
 Gene models:: 33958
 STSs: 21467
 SNPs: 169742
 Clones by BES:100701

Trans-NIH BAC Sequencing Program- apply to get your BAC sequenced!

 



 

 
 

 

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