Rabbit Genome Resources

This page is not being actively maintained and will be taken off line on Jul 2, 2012. Replacement pages are already available here. If you have any questions or concerns about this, please send us a message.

NCBI Web Resources:
Global Query. Query all NCBI Entrez databases in one step.
Site Search. Search NCBI's web and FTP sites.
BLAST. Compare your sequence to other rabbit-specific sequences.
Entrez Gene. Focal point for genes and associated information.
e-PCR. Check your sequence for STSs and view in a genomic context.
GeneRIF. Enrich the functional annotation of loci in Entrez Gene.
Genome Project. Complete and in-progress large-scale sequencing, assembly, annotation and mapping projects.
Map Viewer. Interactive viewer for genome maps, sequence, and genes.
PopSet. Population study datasets.
PubMed Central. Digital archive of full text and content from life sciences journals.
Splign. A tool for aligning mRNAs to genomic sequence.
Taxonomy. Taxonomy Browser hosts summaries of sequence resources and external links through NCBI's LinkOut.
Trace Archive. Collection of raw sequence traces from various sequencing projects.
UniGene. Organization of transcribed sequences into gene-based clusters.
UniSTS. A non-redundant collection of STSs with links to maps and sequence.

FTP Sites:
WGS (AAGW)
Genome

Welcome to the Rabbit Genome Resources guide. The rabbit was selected by the National Human Genome Research Institute for whole genome sequencing to enhance our understanding of the functional and structural elements of the human genome and to markedly increase the rabbit's experimental value as an animal model for human disease. This homepage provides information on rabbit and rabbit-related resources from NCBI and the research community. We welcome your suggestions.

Oryctolagus cuniculus (rabbit)
Photo by Robyn Shaw,
Spring Valley Laboratories, Inc.,
courtesy of Rose Mage, NIAID, NIH

The rabbit (Oryctolagus cuniculus) is widely used as a model for human disease because of its size, physiological attributes, and similar disease characteristics. The rabbit is also a popular dietary source of protein in many parts of the world.



Recent News...

OryCun2.0 Statistics Update: The Broad Institute has refined the coverage statistics of the OryCun2.0 genome assembly. Based on sequence reads of Q20 and greater, the coverage has been updated to 6.51X.

Map Viewer Update! NCBI's annotation of OryCun2.0, a 7.48X coverage of the European rabbit genome provided by the Broad Institute, is now available in Map Viewer. You can browse the genome, search using gene symbols or names, or BLAST a sequence against the assembly.

Please note that all rabbits of the Thorbecke partially inbred strain used for the rabbit genome sequence were lost unfortunately in a fire at Covance soon after the BROAD Institute selected the animal for sequencing.





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New This Month In:

Gene
CoreNucleotide
Protein
PubMed
PubMed Central

MAP VIEWER UPDATE:
NCBI's Map Viewer now displays build 1.1 of the rabbit genome based on the OryCun2.0 assembly from the Broad Institute. BLAST your favorite gene sequence against the genome. Learn more about the Gnomon gene prediction program and the resulting models available in Map Viewer.


Sequence Resources:

Rabbit Genome
at The Broad Institute


Rabbit genome
at Ensembl


Rabbit genome at UCSC

The ENCODE Project

BAC library from BPRC


Mapping Resources:

Rabbitmap


Community Resources:

NIAID Rabbit Immunology
and Infectious Disease
Research


ImMunoGeneTics
Information System


American Rabbit
Breeders Association


Recognized rabbit breeds

Rabbit Colors

FAO Report on Rabbit
Husbandry, Health, and
Production


Online Mendelian
Inheritance in Animals


Animal Diversity Web