Statistics: Genome Annotation

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Human Genome: Current Statistics -- Build 30

Summary of the GenBank source sequences, the contigs, and the features annotated on the sequence based on sequence information available on June 24, 2002. Also summarizes the objects on each non-sequence-based map in the MapViewer.

These statistics are based on the assembly and annotation process documented here.

See also the current release notes.

Statistics reports from these related resources are also available:

Resource	Scope
Cytogenetics	A cytogenetic resource of FISH-mapped, sequence-tagged clones
dbSNP	Database of SNPs and other genetic variation
LocusLink	Focal point for genes and associated information (fruit fly, human, mouse, rat, zebrafish)
RefSeq	NCBI Reference mRNAs and proteins for human, mouse, rat
UniGene	Human UniGene clusters
UniSTS	STS markers

GenBank source sequences

Sequence type	Number used	Length(Mb)	Total(Mb)
Phase 1	11319	1.882
Phase 2	1534	0.231
Phase 3	23791	2.841	5.253

Framework assemblies

Number of contigs generated	1736
Length of sequence assembled (X10³)	2877081

Contigs categorized by type of source sequence

Type of source sequence	Number used	Length (bp)
Draft only	1427	2.30184x10⁸
Finished only	509	7.7762x10⁸
Draft and Finished	785	2.01186x10⁹

Contigs categorized by size

Range in kb	Number	Length (kb)	Percent of total
<30	30	469	0.01
30-100	113	7088	0.24
100-250	547	92587	3.21
250-500	218	78223	2.71
500-1000	227	167372	5.81
1000-5000	479	1079538	37.52
>5000	122	1451804	50.46

Clones, markers, genes, variation annotated on the sequence (by chromosome)

maps based on the sequence assembly

Chr	Clone	Comp	Contig	GScan	Genes	Hs Ests	Mm Ests	RNA	SAGE tag	STS	UniG Hs	UniG Mm	Variation	dbSNP_HAP	gbDNA
1	1154	2235	141	4530	3041	287352	77229	3143	34739	10567	16429	3931	192891	-	6173
2	543	1979	81	4050	2538	201273	56592	2581	27091	7717	14504	2827	152587	-	6705
3	348	1665	167	2993	1898	153506	51239	1960	21549	6672	11521	2572	126453	-	3616
4	426	1646	79	2547	1602	107217	31254	1628	15546	7580	9115	1744	115173	-	3079
5	277	1861	59	2808	1782	138068	39669	1882	18178	5988	9887	1952	150300	-	3844
6	919	1862	34	3370	2268	169283	37390	2370	20125	7034	10527	1947	169432	-	6642
7	336	1512	14	2824	1784	146836	28644	1829	18941	7141	10179	1647	125729	-	3519
8	304	1212	98	2313	1412	99345	24358	1458	13562	4577	7946	1475	101493	-	2790
9	368	981	56	2175	1384	118574	31068	1430	14826	4006	7692	1542	93714	-	2251
10	467	1129	37	2476	1443	107396	25976	1509	15710	4696	8617	1599	104208	-	2725
11	377	1169	65	2818	1937	189532	51369	2023	18771	5880	8769	2177	118045	-	4277
12	292	1072	150	2292	1586	195623	46273	1657	9696	5580	8967	1975	90331	-	3000
13	298	853	8	1368	786	49597	13069	793	7691	2863	4599	828	74098	-	1273
14	218	640	4	1623	1070	95793	17431	1102	12051	4466	5953	1218	65915	-	5051
15	257	676	49	1707	1175	96498	24553	1211	12648	3277	6404	1395	62008	-	2215
16	265	716	53	1944	1294	130304	27411	1326	14321	3336	6418	1417	66843	-	2236
17	138	670	72	2154	1475	171251	37269	1561	17998	3914	7831	1986	58016	-	2770
18	87	633	38	1229	646	38078	11113	665	5911	2173	3623	731	61909	-	1724
19	83	865	42	2133	1696	187336	22067	1761	16750	2674	6524	1470	45626	-	2843
20	370	632	7	1325	924	82553	16594	887	9593	2849	4355	899	47767	-	1215
21	78	473	5	624	418	29272	5448	416	2625	1742	2317	297	48731	2745	1320
22	327	527	11	1061	780	72822	5907	716	8428	2038	3691	563	37681	-	3108
X	915	1530	112	2126	1363	89869	23323	1408	10233	5360	4784	1392	48685	-	3006
Y	29	200	6	316	211	2292	1083	209	181	1072	302	68	3613	-	304
Total	8878	26745	1395	52842	34539	2959933	706387	35551	347164	113213	181030	37660	2162325	2745	75720

Maps in non-sequence coordinates (genetic, cytogenetic, physical)

Genetic

Chr	Genethon	Marshfield	deCODE
1	461	654	458
2	452	626	398
3	353	513	359
4	280	430	293
5	312	456	322
6	311	452	289
7	272	399	241
8	249	380	237
9	189	290	193
10	281	407	250
11	273	387	257
12	249	370	231
13	164	242	172
14	162	247	158
15	145	200	121
16	180	251	149
17	186	286	177
18	136	207	152
19	121	205	114
20	144	207	141
21	61	107	64
22	67	97	65
X	216	253	172
Y	-	-	-
Total	5264	7666	5013

maps in cytogenetic coordinates

Chr	FISH_Clones	Genes	Mitelman	Morbid
1	1431	3375	930	203
2	615	2683	261	131
3	435	2067	559	117
4	463	1690	162	74
5	394	1916	606	97
6	999	2127	622	99
7	366	2055	632	88
8	331	1536	325	71
9	479	1526	496	81
10	537	1530	214	76
11	490	2317	643	133
12	337	1758	430	91
13	350	838	338	39
14	244	1392	312	59
15	282	1280	163	61
16	297	1481	217	81
17	176	1750	355	112
18	111	703	142	33
19	106	1918	185	93
20	446	988	150	32
21	113	462	154	23
22	373	860	308	40
X	1019	1656	97	205
Y	21	251	5	7
Total	10415	38159	8306	2046

physical maps

Chr	GM99_G3	GM99_GB4	NCBI_RH	Stanford_G3	TNG	WI_RH	WI_YAC
1	651	5307	2433	551	4404	1363	912
2	577	3190	1615	515	2978	1177	947
3	520	3062	1573	501	3110	1057	815
4	490	2088	1398	709	4281	759	725
5	283	2298	1189	350	2128	805	657
6	414	3153	1594	407	2002	831	632
7	454	2249	1094	419	1678	799	567
8	274	1797	979	276	1759	631	564
9	261	1794	852	271	1387	632	400
10	365	2052	1194	358	1656	700	517
11	377	2606	1315	411	1613	819	501
12	315	2412	1286	326	1520	758	495
13	153	1032	591	162	1002	364	312
14	268	1615	905	260	1063	512	345
15	210	1563	790	191	1038	504	299
16	190	1284	683	210	1099	441	254
17	264	1847	929	230	915	456	239
18	162	788	487	177	868	334	310
19	196	1671	722	182	468	374	80
20	163	1317	720	159	552	354	270
21	87	442	338	156	972	143	112
22	107	789	337	112	277	269	141
X	173	1347	703	179	492	492	367
Y	-	-	-	73	114	-	-
Total	6954	45703	23727	7185	37376	14574	10461

Last updated August 9, 2002

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