Statistics: Genome Annotation

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Human Genome: Current Statistics -- Build 29

Summary of the GenBank source sequences, the contigs, and the features annotated on the sequence based on sequence information available on April 5, 2002. Also summarizes the objects on each non-sequence-based map in the MapViewer.

These statistics are based on the assembly and annotation process documented here.

See also the current release notes.

Statistics reports from these related resources are also available:

Resource	Scope
Cytogenetics	A cytogenetic resource of FISH-mapped, sequence-tagged clones
dbSNP	Database of SNPs and other genetic variation
LocusLink	Focal point for genes and associated information (fruit fly, human, mouse, rat, zebrafish)
RefSeq	NCBI Reference mRNAs and proteins for human, mouse, rat
UniGene	Human UniGene clusters
UniSTS	STS markers

GenBank source sequences

Sequence type	Number used	Length(Mb)	Total(Mb)
Phase 1	12812	2.140
Phase 2	2285	0.356
Phase 3	20910	2.461	5.251

Framework assemblies

Number of contigs generated	1347
Length of sequence assembled (X10³)	2298366

Contigs categorized by type of source sequence

Type of source sequence	Number used	Length (bp)
Draft only	697	1.37869x10⁸
Finished only	245	2.20082x10⁸
Draft and Finished	1102	2.53019x10⁹

Contigs categorized by size

Range in kb	Number	Length (kb)	Percent of total
<30	22	361	0.01
30-100	78	4800	0.208844022231446
100-250	368	61488	2.67
250-500	192	69371	3.01
500-1000	197	144406	6.28
1000-5000	380	839954	36.54
>5000	110	1177986	51.25

Clones, markers, genes, variation annotated on the sequence (by chromosome)

maps based on the sequence assembly

Chr	Clone	Comp	Contig	GScan	Genes	Genesnew	Hs Ests	Mm Ests	RNA	SAGE tag	STS	UniG Hs	UniG Mm	Variation	dbSNP_HAP	gbDNA
1	1127	2785	137	4588	3892	3891	241975	72504	3985	32323	10562	15440	3937	187886	-	5536
2	542	2427	130	4160	3481	3480	173972	60309	3546	25202	7777	13852	2894	150614	-	6078
3	358	2352	256	3095	2548	2547	134176	49766	2621	19957	6660	10805	2526	124281	-	2792
4	434	2174	147	2585	2167	2167	92771	30148	2205	14226	7586	8603	1744	115474	-	2450
5	284	2727	127	2916	2447	2412	117472	38472	2577	17043	6189	9451	1961	148129	-	2852
6	926	2254	96	3273	2675	2647	58517	37068	2732	7865	6677	9928	1874	138309	-	6263
7	335	1805	54	2924	2425	2425	47475	24160	2476	5387	7231	9723	1563	126318	-	3331
8	317	1792	124	2396	2005	2005	83985	24346	2061	12543	4636	7478	1408	99510	-	2101
9	359	1145	53	2156	1779	1779	100597	30442	1814	13684	4002	7184	1508	87954	-	1817
10	473	1436	72	2554	2121	2121	60698	24850	2170	9381	4797	8188	1616	106893	-	2412
11	382	1824	102	2700	2344	2343	79712	39601	2406	9388	5735	7823	1936	111658	-	3407
12	289	1442	135	2263	1979	1975	162783	41427	2043	17749	5526	8467	1883	87356	-	2514
13	302	1043	19	1431	1188	1188	31462	16338	1200	4833	2884	4438	835	73208	-	1112
14	211	809	13	1657	1415	1414	80224	17641	1442	11255	4492	5702	1240	63565	-	4835
15	262	927	66	1734	1490	1489	75839	22091	1529	11258	3230	6042	1374	60670	-	1924
16	255	922	58	1961	1663	1663	97174	23185	1710	11856	3314	6035	1372	63904	-	1958
17	138	892	68	2229	1898	1891	137506	35972	1978	16604	3894	7523	1988	57396	-	2525
18	99	1121	90	1291	1032	1032	27468	10723	1056	4655	2290	3530	732	61882	-	1195
19	80	953	61	2143	1975	1963	152105	18188	2029	15356	2650	6201	1388	43025	-	2647
20	367	631	6	1331	1176	1114	68955	16098	1153	8935	2840	4127	883	46210	-	1174
21	77	475	5	634	554	532	25045	5350	545	2419	1734	2174	307	45233	2752	1391
22	326	527	11	1080	968	874	60547	5517	901	7680	2027	3519	535	35977	-	2899
X	910	1699	139	2140	1820	1811	75341	22906	1865	9448	5269	4494	1315	46576	-	2738
Y	29	198	4	321	290	288	1447	1027	296	159	1065	256	62	3339	-	277
Total	8886	34429	2042	53726	45443	45162	2188281	669224	46468	289206	113292	171182	36966	2085828	2752	66256

Maps in non-sequence coordinates (genetic, cytogenetic, physical)

Genetic

Chr	Genethon	Marshfield	deCODE
1	461	654	458
2	452	626	398
3	353	513	359
4	280	430	293
5	312	456	322
6	311	452	289
7	272	399	241
8	249	380	237
9	189	290	193
10	281	407	250
11	273	387	257
12	249	370	231
13	164	242	172
14	162	247	158
15	145	201	121
16	180	251	149
17	186	286	177
18	136	207	152
19	121	205	114
20	144	207	141
21	61	107	64
22	67	97	65
X	216	253	172
Y	-	-	-
Total	5264	7667	5013

maps in cytogenetic coordinates

Chr	FISH_Clones	Genes	Mitelman	Morbid
1	1406	4192	930	199
2	608	3682	261	131
3	424	2700	559	113
4	453	2250	162	73
5	387	2574	606	93
6	991	2929	622	96
7	361	2687	632	87
8	325	2114	325	67
9	469	1916	496	77
10	528	2228	214	74
11	486	2778	643	128
12	331	2118	430	87
13	343	1241	338	40
14	242	1745	312	58
15	275	1599	163	58
16	294	1833	217	78
17	169	2113	355	110
18	110	1090	142	33
19	99	2167	185	91
20	444	1290	150	32
21	112	614	154	23
22	373	1076	308	40
X	1017	2109	97	205
Y	21	322	5	7
Total	10268	49367	8306	2000

physical maps

Chr	GM99_G3	GM99_GB4	NCBI_RH	Stanford_G3	TNG	WI_RH	WI_YAC
1	661	5346	2433	551	4404	1363	912
2	584	3191	1615	515	2978	1177	948
3	525	3063	1573	501	3110	1057	815
4	494	2088	1398	709	4281	759	726
5	283	2299	1189	350	2128	805	657
6	421	3155	1594	407	2002	831	632
7	461	2249	1094	419	1678	799	568
8	275	1797	979	276	1759	631	566
9	266	1795	852	271	1387	632	401
10	369	2053	1194	358	1656	700	517
11	385	2606	1315	411	1613	819	501
12	322	2412	1286	326	1520	758	495
13	156	1032	591	162	1002	364	312
14	275	1616	905	260	1063	512	345
15	213	1563	790	191	1038	504	301
16	192	1284	683	210	1099	441	254
17	265	1847	929	230	915	456	239
18	163	789	487	177	868	334	311
19	200	1671	722	182	468	374	80
20	167	1317	720	159	552	354	270
21	88	442	338	156	972	143	112
22	109	789	337	112	277	269	141
X	176	1347	703	179	492	492	367
Y	-	-	-	73	114	-	-
Total	7050	45751	23727	7185	37376	14574	10470

Last updated July 30, 2002

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