Statistics: Genome Annotation

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Human Genome: Current Statistics -- Build 28

Summary of the GenBank source sequences, the contigs, and the features annotated on the sequence based on sequence information available on December 24, 2001. Also summarizes the objects on each non-sequence-based map in the MapViewer.

These statistics are based on the assembly and annotation process documented here.

See also the current release notes.

Statistics reports from these related resources are also available:

Resource	Scope
Cytogenetics	A cytogenetic resource of FISH-mapped, sequence-tagged clones
dbSNP	Dabase of SNPs and other genetic variation
LocusLink	Focal point for genes and associated information (fruit fly, human, mouse, rat, zebrafish)
RefSeq	NCBI Reference mRNAs and proteins for human, mouse, rat
UniGene	Human UniGene clusters
UniSTS	STS markers

GenBank source sequences

Framework assemblies

Number of contigs generated	2992
Length of sequence assembled (X10³)	2857328

Contigs categorized by type of source sequence

Contigs categorized by size

Clones, markers, genes, variation annotated on the sequence (by chromosome)

maps based on the sequence assembly

Chr	Clone	Comp	Contig	GScan	Genes	RNA	STS	UniG_Hs	UniG_Mm	Variation	gbDNA
1	1208	3165	229	4819	4635	4657	10628	15735	4044	193156	5032
2	553	2193	255	3943	3693	3707	7469	13213	2638	150158	5626
3	365	2232	316	3159	2940	2960	6614	10618	2466	130562	2581
4	408	1802	333	2396	2253	2263	6885	7808	1567	112164	2157
5	284	2365	247	2814	2713	2769	5904	9013	1795	148458	2608
6	914	2368	63	3140	2833	2846	6381	9715	1768	142545	5785
7	335	1762	86	2988	2771	2799	7134	9750	1502	123675	3234
8	302	1623	193	2338	2167	2185	4400	7132	1294	100341	1898
9	375	1192	80	2234	2060	2072	4045	7178	1535	89279	1781
10	482	1500	136	2621	2378	2398	4802	8217	1591	105432	2272
11	402	1986	119	3019	2858	2894	6039	8490	2195	120019	3200
12	290	1436	145	2411	2354	2377	5695	8644	1916	91372	2480
13	304	1110	30	1501	1355	1359	2919	4446	885	73659	1052
14	221	816	23	1672	1603	1629	4491	5669	1227	64038	4549
15	258	858	91	1690	1597	1612	3159	5876	1312	61333	1755
16	253	900	90	1978	1916	1923	3275	5957	1312	64842	1883
17	138	847	100	2249	2202	2235	3925	7450	1818	59787	2344
18	92	1055	108	1344	1204	1205	2293	3467	739	62584	1097
19	84	935	98	2227	2361	2386	2697	6323	1405	45127	2604
20	323	634	14	1346	1276	1287	2892	4152	901	45447	1138
21	78	476	6	629	616	631	1729	2139	306	45041	1350
22	325	533	17	1089	1047	1061	2011	3501	528	36141	2846
X	924	1703	162	2107	2062	2079	5133	4444	1278	46137	2501
Y	27	202	8	323	330	331	476	273	59	3158	276
Total	8946	33736	2991	54113	51298	51739	111038	169291	36093	2115434	62098

Maps in non-sequence coordinates (genetic, cytogenetic, physical)

Genetic

maps in cytogenetic coordinates

Chr	FISH_Clones	Genes	Mitelman	Morbid
1	1406	4924	930	197
2	608	3909	261	130
3	422	3110	559	112
4	453	2375	162	70
5	387	2825	606	88
6	991	3039	622	96
7	361	3033	632	85
8	325	2269	325	66
9	469	2210	496	76
10	528	2449	214	72
11	486	3195	643	127
12	331	2475	430	85
13	343	1398	338	39
14	242	1939	312	53
15	275	1708	163	59
16	294	2100	217	76
17	169	2428	355	109
18	110	1246	142	32
19	99	2581	185	89
20	444	1422	150	31
21	112	695	154	23
22	373	1214	308	40
X	1017	2370	97	207
Y	18	359	5	7
Total	10263	55273	8306	1969

physical maps

Chr	GM99_G3	GM99_GB4	NCBI_RH	Stanford_G3	TNG	WI_RH	WI_YAC
1	661	5351	2433	551	4404	1363	913
2	586	3191	1615	515	2978	1177	948
3	527	3063	1573	501	3110	1057	815
4	494	2088	1398	709	4281	759	726
5	283	2299	1189	350	2128	805	657
6	422	3156	1594	407	2002	831	632
7	461	2249	1094	419	1678	799	568
8	276	1797	979	276	1759	631	566
9	266	1795	852	271	1387	632	402
10	371	2053	1194	358	1656	700	517
11	385	2606	1315	411	1613	819	501
12	323	2412	1286	326	1520	758	495
13	156	1032	591	162	1002	364	312
14	276	1616	905	260	1063	512	345
15	214	1563	790	191	1038	504	301
16	192	1284	683	210	1099	441	254
17	265	1847	929	230	915	456	239
18	163	789	487	177	868	334	311
19	200	1672	722	182	468	374	80
20	167	1317	720	159	552	354	270
21	88	442	338	156	972	143	112
22	109	789	337	112	277	269	141
X	176	1347	703	179	492	492	367
Y	-	-	-	73	114	-	-
Total	7061	45758	23727	7185	37376	14574	10472

Last updated February 20, 2002

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